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BaseInfo

ncRNA ID	ath-miR5012
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr2:8432648-8432796 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	100 - UUUUACUGCUACUUGUGUUCC - 120
Stem-loop(if miRNA)	UG          UGAAAAU  -   G G      A    A       C   CAC         C  -C  U AUAAUGAU  GUGAGUUUGA       GG ACU U GAGGAA ACAA UAGCAGU AAA   CGAUUAGAA AC  AC U ||||||||  ||||||||||       || ||| | |||||| |||| ||||||| |||   ||||||||| ||  || UAUUACUA  CACUCAAACU       UC UGA A CUCCUU UGUU AUCGUCA UUU   GCUAAUCUU UG  UG A         --          -------  A   G A      G    C       U   AUA         C  CA  C
Stem-loop sequence	AUAAUGAUUGGUGAGUUUGAUGAAAAUGGACUGUGGAGGAAAACAAAUAGCAGUCAAACACCGAUUAGAACACCACUUACGUACGUCUUCUAAUCGAUAUUUUACUGCUACUUGUGUUCCUCAAGAGUACUUCAAACUCACAUCAUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT030386.1	ncRNA:21   CCUUGUGUUCAUCGUCAUUUU   1   *||=||*=||||||||||||| targets:1364   UGAGCAAGAGUAGCAGUAAAA   1384 Target Full Sequence	3.0	Arabidopsis thaliana At1g53700 gene, complete cds	NA	coding protein	psRNATarget
BX814579.1	ncRNA:21   CCUUGUGUUCAUCGUCAUUUU   1   *||=||*=||||||||||||| targets:1386   UGAGCAAGAGUAGCAGUAAAA   1406 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB82ZB11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_104248.4	ncRNA:21   CCUUGUGUUCAUCGUCAUUUU   1   *||=||*=||||||||||||| targets:1534   UGAGCAAGAGUAGCAGUAAAA   1554 Target Full Sequence	3.0	Arabidopsis thaliana WAG 1 (WAG1), mRNA	WAG 1(WAG1)	coding protein	psRNATarget

Reference

1	PMID:21357774 "MicroRNA activity in the Arabidopsis male germline"; Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD; J Exp Bot. 62:1611-1620(2011).