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BaseInfo

ncRNA ID	bna-miR399b
Species	Brassica napus
Class	miRNA
Genome position	EM:AC189240:96538-96644 [+]
Reference genome	BrassicaDB-20080411
Source	miRBase
Length	21
Mature sequence(if miRNA)	83 - UGCCAAAGGAGAUUUGCCCGG - 103
Stem-loop(if miRNA)	A     A       A       GA   -      UU   CUU     CU AUUAC GGGCA GAUCUCU UUGGCAG  AAC CAUUAC  GAC   UGCAU  C ||||| ||||| ||||||| |||||||  ||| ||||||  |||   ||||| UAAUG CCCGU UUAGAGG AACCGUC  UUG GUGAUG  UUG   ACGUA  U      G     -       A       UC   A      UU   -UU     UU
Stem-loop sequence	AUUACAGGGCAAGAUCUCUAUUGGCAGGAAACCAUUACUUGACCUUUGCAUCUCUUUAUGCAUUGUUUUGUAGUGAGUUCUCUGCCAAAGGAGAUUUGCCCGGUAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013889066.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   ==||||||||||||||||||| targets:496   UUGGGCAAAUCUCCUUUGGCA   516 Target Full Sequence	0.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   =*||||||||||||||||||| targets:420   UAGGGCAAAUCUCCUUUGGCA   440 Target Full Sequence	0.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget
XM_013889066.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   ==*|||||||||||||||||| targets:672   UUCGGCAAAUCUCCUUUGGCA   692 Target Full Sequence	1.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013889066.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   |*|*||||||||||||||||| targets:791   CAGAGCAAAUCUCCUUUGGCA   811 Target Full Sequence	1.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013889066.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   =*|||||*||||||||||||| targets:591   UGGGGCAUAUCUCCUUUGGCA   611 Target Full Sequence	1.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   ==*|||||||||||||||||| targets:595   UUCGGCAAAUCUCCUUUGGCA   615 Target Full Sequence	1.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   |*|*||||||||||||||||| targets:714   CAGAGCAAAUCUCCUUUGGCA   734 Target Full Sequence	1.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   =*|||||*||||||||||||| targets:514   UGGGGCAUAUCUCCUUUGGCA   534 Target Full Sequence	1.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget
XM_013889066.1	ncRNA:21   GGCC-CGUUUAGAGGAAACCGU   1   =|||-||||||||||||||||| targets:733   UCGGAGCAAAUCUCCUUUGGCA   754 Target Full Sequence	2.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106447193), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106447193)	coding protein	psRNATarget
XM_013863849.1	ncRNA:21   GGCC-CGUUUAGAGGAAACCGU   1   =|||-||||||||||||||||| targets:656   UCGGAGCAAAUCUCCUUUGGCA   677 Target Full Sequence	2.0	PREDICTED: Brassica napus probable ubiquitin-conjugating enzyme E2 24 (LOC106423068), mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC106423068)	coding protein	psRNATarget

Reference

1	PMID:22138974 "Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes"; Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ; Plant Physiol. 158:813-823(2012).