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BaseInfo

ncRNA ID	bna-miR171e
Species	Brassica napus
Class	miRNA
Genome position	EM:AC189214:74569-74660 [-]
Reference genome	BrassicaDB-20080411
Source	miRBase
Length	21
Mature sequence(if miRNA)	3 - UUGAGCCGUGCCAAUAUCACG - 23
Stem-loop(if miRNA)	CAAUA  A        UG             -     ACA    UUU      CG GAUAUUGG  UGGUUCAAUCAGA AAACC   CUCU   G      || ||||||||  ||||||||||||| |||||   ||||      GC CUAUAACC  GCCGAGUUAGUUU UUUGG   GAGA   U ---GA  A        GU             G     CUA    UGU
Stem-loop sequence	CAAUACGAGAUAUUGGUGUGGUUCAAUCAGAAAACCACACUCUUUUGUUGUAGAGAUCGGUUUGUUUGAUUGAGCCGUGCCAAUAUCACGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013830007.1	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   =|||||||||*|||||||||| targets:480   UGUGAUAUUGUCACGGCUCAA   500 Target Full Sequence	1.5	PREDICTED: Brassica napus scarecrow-like protein 15 (LOC106389684), mRNA	scarecrow-like protein 15(LOC106389684)	coding protein	psRNATarget
XM_013797403.1	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   =|||||||||*|||||||||| targets:605   UGUGAUAUUGUCACGGCUCAA   625 Target Full Sequence	1.5	PREDICTED: Brassica napus scarecrow-like protein 15 (LOC106357715), mRNA	scarecrow-like protein 15(LOC106357715)	coding protein	psRNATarget
XM_013852286.1	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   *|*|||||||||=|||||||| targets:811   AGGGAUAUUGGCGCGGCUCAA   831 Target Full Sequence	2.5	PREDICTED: Brassica napus scarecrow-like protein 22 (LOC106411510), mRNA	scarecrow-like protein 22(LOC106411510)	coding protein	psRNATarget
XM_013879337.1	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   *|*|||||||||=|||||||| targets:883   AGGGAUAUUGGCGCGGCUCAA   903 Target Full Sequence	2.5	PREDICTED: Brassica napus scarecrow-like protein 27 (LOC106438236), mRNA	scarecrow-like protein 27(LOC106438236)	coding protein	psRNATarget
XM_013832628.1	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   *|*|||||||||=|||||||| targets:904   AGGGAUAUUGGCGCGGCUCAA   924 Target Full Sequence	2.5	PREDICTED: Brassica napus scarecrow-like protein 22 (LOC106391896), mRNA	scarecrow-like protein 22(LOC106391896)	coding protein	psRNATarget
XM_013841612.1	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   *|*|||||||||=|||||||| targets:876   GGGGAUAUUGGCGCGGCUCAA   896 Target Full Sequence	2.5	PREDICTED: Brassica napus scarecrow-like protein 6 (LOC106401154), mRNA	scarecrow-like protein 6(LOC106401154)	coding protein	psRNATarget
XM_013872928.1	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   *|*|||||||||=|||||||| targets:1135   AGGGAUAUUGGCGCGGCUCAA   1155 Target Full Sequence	2.5	PREDICTED: Brassica napus scarecrow-like protein 27 (LOC106432091), mRNA	scarecrow-like protein 27(LOC106432091)	coding protein	psRNATarget
XM_013792921.1	ncRNA:21   GCACUAUAACCGUGCCGAGUU   1   *|*|||||||||=|||||||| targets:1219   AGGGAUAUUGGCGCGGCUCAA   1239 Target Full Sequence	2.5	PREDICTED: Brassica napus scarecrow-like protein 27 (LOC106353214), mRNA	scarecrow-like protein 27(LOC106353214)	coding protein	psRNATarget

Reference

1	PMID:17659282 "Cloning and characterization of microRNAs from Brassica napus"; Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL; FEBS Lett. 581:3848-3856(2007).
2	PMID:22138974 "Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes"; Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ; Plant Physiol. 158:813-823(2012).