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BaseInfo

ncRNA ID bna-miR397b
Species Brassica napus
Class miRNA
Genome position EM:AC189186:82670-82765 [-]
Reference genome BrassicaDB-20080411
Source miRBase
Length 22
Mature sequence(if miRNA) 70 - UCAUUGAGUGCAGCGUUGAUGU - 91
Stem-loop(if miRNA)       C       G              U  A   --    UU    U
GAACAU AUUGAGU CAGCGUUGAUGUGA UU CUU  AUCU  UUCA U
|||||| ||||||| |||||||||||||| || |||  ||||  ||||
UUUGUA UAACUCG GUUGCAACUACAUU AA GAA  UAGG  AAGU G
      U       -              U  C   AU    -U    U
Stem-loop sequence GAACAUCAUUGAGUGCAGCGUUGAUGUGAUUUACUUAUCUUUUUCAUUGUUGAAUGGAUUAAAGCAAUUUACAUCAACGUUGGCUCAAUUAUGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013787011.1
ncRNA:22   UGUAGUUGCGACGUGAGUUACU   1
  **||||||||||||||=|||||
targets:747   UAAUCAACGCUGCACUUAAUGA   768

1.5 PREDICTED: Brassica napus laccase-17-like (LOC106347478), mRNA laccase-17-like(LOC106347478) coding protein psRNATarget
XM_013825662.1
ncRNA:22   UGUAGUUGCGACGUGAGUUACU   1
  **||||||||||||||=|||||
targets:787   UAAUCAACGCUGCACUUAAUGA   808

1.5 PREDICTED: Brassica napus laccase-17-like (LOC106385758), transcript variant X1, mRNA laccase-17-like(LOC106385758) coding protein psRNATarget
XM_013825669.1
ncRNA:22   UGUAGUUGCGACGUGAGUUACU   1
  **||||||||||||||=|||||
targets:787   UAAUCAACGCUGCACUUAAUGA   808

1.5 PREDICTED: Brassica napus laccase-17-like (LOC106385758), transcript variant X2, mRNA laccase-17-like(LOC106385758) coding protein psRNATarget
XM_013865948.1
ncRNA:22   UGUAGUUGCGACGUGAGUUACU   1
  *|||||||||||||||*|||||
targets:760   UCAUCAACGCUGCACUAAAUGA   781

1.5 PREDICTED: Brassica napus laccase-11 (LOC106425230), mRNA laccase-11(LOC106425230) coding protein psRNATarget
XM_013800205.1
ncRNA:22   UGUAGUUGCGACGUGAGUUACU   1
  *|||||||||||||||*|||||
targets:765   UCAUCAACGCUGCACUAAAUGA   786

1.5 PREDICTED: Brassica napus laccase-11-like (LOC106360585), mRNA laccase-11-like(LOC106360585) coding protein psRNATarget
XM_013864690.1
ncRNA:22   UGUAGUUGCGACGUGAGUUACU   1
  *|||||||||||||||*|||||
targets:780   UCAUCAACGCUGCACUAAAUGA   801

1.5 PREDICTED: Brassica napus laccase-11-like (LOC106423947), mRNA laccase-11-like(LOC106423947) coding protein psRNATarget
XM_013873443.1
ncRNA:22   UG--UAGUUGCGACGUGAGUUACU   1
  ||--|||||=|||||||||=||||
targets:144   ACUGAUCAAUGCUGCACUCGAUGA   167

2.5 PREDICTED: Brassica napus laccase-2-like (LOC106432597), mRNA laccase-2-like(LOC106432597) coding protein psRNATarget
XM_013847410.1
ncRNA:22   UG--UAGUUGCGACGUGAGUUACU   1
  ||--|||||=|||||||||=||||
targets:783   ACUGAUCAAUGCUGCACUCGAUGA   806

2.5 PREDICTED: Brassica napus laccase-2 (LOC106406699), transcript variant X2, mRNA laccase-2(LOC106406699) coding protein psRNATarget
XM_013847409.1
ncRNA:22   UG--UAGUUGCGACGUGAGUUACU   1
  ||--|||||=|||||||||=||||
targets:810   ACUGAUCAAUGCUGCACUCGAUGA   833

2.5 PREDICTED: Brassica napus laccase-2 (LOC106406699), transcript variant X1, mRNA laccase-2(LOC106406699) coding protein psRNATarget
XM_013843602.1
ncRNA:22   UG--UAGUUGCGACGUGAGUUACU   1
  ||--=||||=||||||||=|||||
targets:706   ACUAGUCAAUGCUGCACUUAAUGA   729

2.5 PREDICTED: Brassica napus laccase-4-like (LOC106402805), mRNA laccase-4-like(LOC106402805) coding protein psRNATarget
XM_013892922.1
ncRNA:22   UG--UAGUUGCGACGUGAGUUACU   1
  ||--=||||=||||||||=|||||
targets:719   ACUAGUCAAUGCUGCACUUAAUGA   742

2.5 PREDICTED: Brassica napus laccase-4 (LOC106451063), mRNA laccase-4(LOC106451063) coding protein psRNATarget
XM_013892921.1
ncRNA:22   UG--UAGUUGCGACGUGAGUUACU   1
  ||--=||||=||||||||=|||||
targets:719   ACUAGUCAAUGCUGCACUUAAUGA   742

2.5 PREDICTED: Brassica napus laccase-4-like (LOC106451062), mRNA laccase-4-like(LOC106451062) coding protein psRNATarget
XM_013892923.1
ncRNA:22   UG--UAGUUGCGACGUGAGUUACU   1
  ||--=||||=||||||||=|||||
targets:719   ACUAGUCAAUGCUGCACUUAAUGA   742

2.5 PREDICTED: Brassica napus laccase-4 (LOC106451064), mRNA laccase-4(LOC106451064) coding protein psRNATarget
XM_013794782.1
ncRNA:22   UG--UAGUUGCGACGUGAGUUACU   1
  ||--=||||=||||||||=|||||
targets:822   ACUAGUCAAUGCUGCACUUAAUGA   845

2.5 PREDICTED: Brassica napus laccase-4-like (LOC106354757), mRNA laccase-4-like(LOC106354757) coding protein psRNATarget
XM_013889632.1
ncRNA:22   UGUAGUUGCGACGUGAGUUACU   1
  **=||||=||||||||=|||||
targets:726   UAGUCAAUGCUGCACUUAAUGA   747

2.5 PREDICTED: Brassica napus laccase-4-like (LOC106447656), mRNA laccase-4-like(LOC106447656) coding protein psRNATarget

Reference

1 PMID:17659282
"Cloning and characterization of microRNAs from Brassica napus";
Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL;
FEBS Lett. 581:3848-3856(2007).
2 PMID:22138974
"Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes";
Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ;
Plant Physiol. 158:813-823(2012).
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