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BaseInfo

ncRNA ID	bna-miR160d
Species	Brassica napus
Class	miRNA
Genome position	EM:AC183492:98296-98384 [+]
Reference genome	BrassicaDB-20080411
Source	miRBase
Length	21
Mature sequence(if miRNA)	5 - UGCCUGGCUCCCUGUAUGCCA - 25
Stem-loop(if miRNA)	C     C -           A   AAAUA     C  A GUCAUGC UGGCU C CUGUAUGCCAC AGU     CCGAU UC U ||||||| ||||| | ||||||||||| |||     ||||| || U CAGUACG ACUGA G GACAUGCGGUG UCA     GGCUA AG A        A     U A           A   ---CA     A  U
Stem-loop sequence	GUCAUGCCUGGCUCCCUGUAUGCCACAAGUAAAUACCGAUCUCAUUAUGAAAUCGGACACUAGUGGCGUACAGAGUAGUCAAGCAUGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013793213.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1313   UGGCAUGCAGGGAGCCAGGCA   1333 Target Full Sequence	1.0	PREDICTED: Brassica napus auxin response factor 17-like (LOC106353451), mRNA	auxin response factor 17-like(LOC106353451)	coding protein	psRNATarget
XM_013809033.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1324   UGGCAUGCAGGGAGCCAGGCA   1344 Target Full Sequence	1.0	PREDICTED: Brassica napus auxin response factor 17-like (LOC106368952), mRNA	auxin response factor 17-like(LOC106368952)	coding protein	psRNATarget
XM_013878072.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   ||||||=|||||||||||||| targets:1362   UGGCAUGCAGGGAGCCAGGCA   1382 Target Full Sequence	1.0	PREDICTED: Brassica napus auxin response factor 18-like (LOC106437151), mRNA	auxin response factor 18-like(LOC106437151)	coding protein	psRNATarget
XM_013840650.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||=|||||||||||||| targets:319   CGGCAUGCAGGGAGCCAGGCA   339 Target Full Sequence	1.0	PREDICTED: Brassica napus auxin response factor 17-like (LOC106400269), transcript variant X1, mRNA	auxin response factor 17-like(LOC106400269)	coding protein	psRNATarget
XM_013840662.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||=|||||||||||||| targets:1367   CGGCAUGCAGGGAGCCAGGCA   1387 Target Full Sequence	1.0	PREDICTED: Brassica napus auxin response factor 17-like (LOC106400284), mRNA	auxin response factor 17-like(LOC106400284)	coding protein	psRNATarget
XM_013794565.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *|||||*|||||||||||||| targets:1381   CGGCAUCCAGGGAGCCAGGCA   1401 Target Full Sequence	1.0	PREDICTED: Brassica napus auxin response factor 17-like (LOC106354590), mRNA	auxin response factor 17-like(LOC106354590)	coding protein	psRNATarget
XM_013836968.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||*||||||||||||||||| targets:1529   AGGAAUACAGGGAGCCAGGCA   1549 Target Full Sequence	1.0	PREDICTED: Brassica napus auxin response factor 10 (LOC106396551), mRNA	auxin response factor 10(LOC106396551)	coding protein	psRNATarget
XM_013830883.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||=*|||||||||||||||| targets:224   GGGUUUACAGGGAGCCAGGCA   244 Target Full Sequence	2.0	PREDICTED: Brassica napus auxin response factor 16-like (LOC106390396), mRNA	auxin response factor 16-like(LOC106390396)	coding protein	psRNATarget
XM_013884453.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||=*|||||||||||||||| targets:1506   GGGUUUACAGGGAGCCAGGCA   1526 Target Full Sequence	2.0	PREDICTED: Brassica napus auxin response factor 16-like (LOC106442809), mRNA	auxin response factor 16-like(LOC106442809)	coding protein	psRNATarget
XM_013830782.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||=*|||||||||||||||| targets:1490   GGGUUUACAGGGAGCCAGGCA   1510 Target Full Sequence	2.0	PREDICTED: Brassica napus auxin response factor 16-like (LOC106390311), mRNA	auxin response factor 16-like(LOC106390311)	coding protein	psRNATarget
XM_013892562.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||=*|||||||||||||||| targets:1524   GGGUUUACAGGGAGCCAGGCA   1544 Target Full Sequence	2.0	PREDICTED: Brassica napus auxin response factor 16-like (LOC106450799), mRNA	auxin response factor 16-like(LOC106450799)	coding protein	psRNATarget
XM_013852053.1	ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1   *||=*|||||||||||||||| targets:1497   GGGUUUACAGGGAGCCAGGCA   1517 Target Full Sequence	2.0	PREDICTED: Brassica napus auxin response factor 16 (LOC106411312), mRNA	auxin response factor 16(LOC106411312)	coding protein	psRNATarget

Reference

1	PMID:22138974 "Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes"; Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ; Plant Physiol. 158:813-823(2012).