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BaseInfo

ncRNA ID	ath-miRf11200-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - CCUUGAAGAGUGUUGUUGCU - NA
Stem-loop(if miRNA)	A  UAA        A      --UUG  CA  ---UUA   A   -G  G      ----      A   AUC    AA GGA GA   CCUUGAAG GUGUUG     CU  AG      AGC UCU  GA UUGUCU    ACAAUU CUU   UCCA  G ||| ||   |||||||| ||||||     ||  ||      ||| |||  || ||||||    |||||| |||   ||||  G CCU CU   GGGAUUUC CAUAAC     GA  UC      UCG AGG  CU AACAGA    UGUUAG GAG   AGGU  A    -  UUA        -      CUAAA  AG  UUGGAA   A   AG  G      CUCU      A   GCC    CA
Stem-loop sequence	GGAAGAUAACCUUGAAGAGUGUUGUUGCUCAAGUUAAGCAUCUGGAGUUGUCUACAAUUACUUAUCUCCAAAGGAACUGGACCGGAGAGAUUGUUCUCAGACAAGUCGAGGAAGCUAAGGUUCUGAAGAAAUCCAAUACCUUUAGGGAUUUCUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
FJ708795.1	ncRNA:20   UCGUUGUUGUGAGAAGUUCC   1   |||||||||||||||||||| targets:1567   AGCAACAACACUCUUCAAGG   1586 Target Full Sequence	0.0	Arabidopsis thaliana leucine-rich repeat receptor-like protein kinase (LRR-RLK) mRNA, partial cds	NA	coding protein	psRNATarget
AJ550162.1	ncRNA:20   UCGUUGUUGUGAGAAGUUCC   1   |||||||||||||||||||| targets:1642   AGCAACAACACUCUUCAAGG   1661 Target Full Sequence	0.0	Arabidopsis thaliana mRNA for LRR receptor-like kinase 1 (rch1 gene)	NA	coding protein	psRNATarget
NM_124271.3	ncRNA:20   UCGUUGUUGUGAGAAGUUCC   1   |||||||||||||||||||| targets:1689   AGCAACAACACUCUUCAAGG   1708 Target Full Sequence	0.0	Arabidopsis thaliana Leucine-rich repeat transmembrane protein kinase family protein mRNA	Leucine-rich repeat transmembrane protein kinase family protein(AT5G48940)	coding protein	psRNATarget
BT008404.1	ncRNA:20   UCGUUGUUGUGAGAAGUUCC   1   *|||||||||=||||||||| targets:1397   UGCAACAACAUUCUUCAAGG   1416 Target Full Sequence	1.5	Arabidopsis thaliana At1g04790 gene, complete cds	NA	coding protein	psRNATarget
BX815048.1	ncRNA:20   UCGUUGUUGUGAGAAGUUCC   1   *|||||||||=||||||||| targets:1471   UGCAACAACAUUCUUCAAGG   1490 Target Full Sequence	1.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS29ZD08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AY054498.1	ncRNA:20   UCGUUGUUGUGAGAAGUUCC   1   *|||||||||=||||||||| targets:1440   UGCAACAACAUUCUUCAAGG   1459 Target Full Sequence	1.5	Arabidopsis thaliana Unknown protein (At1g04790; F13M7.22) mRNA, complete cds	NA	coding protein	psRNATarget
NM_100357.5	ncRNA:20   UCGUUGUUGUGAGAAGUUCC   1   *|||||||||=||||||||| targets:1518   UGCAACAACAUUCUUCAAGG   1537 Target Full Sequence	1.5	Arabidopsis thaliana RING/U-box superfamily protein mRNA	RING/U-box superfamily protein(AT1G04790)	coding protein	psRNATarget
NM_120699.1	ncRNA:20   UCG-UUGUUGUGAGAAGUUCC   1   =||-||||||||||||||||| targets:459   GGCUAACAACACUCUUCAAGG   479 Target Full Sequence	2.0	Arabidopsis thaliana sucrose-proton symporter 9 (SUC9), partial mRNA	sucrose-proton symporter 9(SUC9)	coding protein	psRNATarget
NM_001344570.1	ncRNA:20   UCGUUGUUGUGAGAAGUUCC   1   ||||||||||||||||||** targets:2228   AGCAACAACACUCUUCAAUU   2247 Target Full Sequence	2.5	Arabidopsis thaliana minichromosome maintenance (MCM2/3/5) family protein (MCM6), partial mRNA	minichromosome maintenance (MCM2/3/5) family protein(MCM6)	coding protein	psRNATarget
FJ708773.1	ncRNA:20   UCGUUGUUGUGAGAAGUUCC   1   =|||=|||||*||||||||| targets:1582   GGCAGCAACAAUCUUCAAGG   1601 Target Full Sequence	2.5	Arabidopsis thaliana leucine-rich repeat receptor-like protein kinase (LRR-RLK) mRNA, partial cds	NA	coding protein	psRNATarget
AJ496433.1	ncRNA:20   UCGUUGUUGUGAGAAGUUCC   1   =|||=|||||*||||||||| targets:1582   GGCAGCAACAAUCUUCAAGG   1601 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for extra sporogenous cells (ESP gene)	NA	coding protein	psRNATarget
AJ488154.1	ncRNA:20   UCGUUGUUGUGAGAAGUUCC   1   =|||=|||||*||||||||| targets:1630   GGCAGCAACAAUCUUCAAGG   1649 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for receptor-like protein kinase-like protein (ems1 gene)	NA	coding protein	psRNATarget
NM_120810.3	ncRNA:20   UCGUUGUUGUGAGAAGUUCC   1   =|||=|||||*||||||||| targets:1840   GGCAGCAACAAUCUUCAAGG   1859 Target Full Sequence	2.5	Arabidopsis thaliana Leucine-rich repeat transmembrane protein kinase (EMS1), mRNA	Leucine-rich repeat transmembrane protein kinase(EMS1)	coding protein	psRNATarget