Search result

BaseInfo

ncRNA ID	ath-miRf11198-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - UCUUCUUCGAUCGGUUCUGA - NA
Stem-loop(if miRNA)	C        UCGA                A     G      A   A          ---------      G       U UAAAGAU UGUCUUCU    UCGGUUCUGAGUUGUU AAACU AUUUGG GAU UGAUGUGAAA         UCUGUU UUGAGUA A ||||||| ||||||||    |||||||||||||||| ||||| |||||| ||| ||||||||||         |||||| ||||||| A AUUUCUA ACAGAAGA    AGCCAAGGCUCAACAA UUUGA UAAACC CUA ACUACACUUU         AGAUAG AAUUCAU C        A        ----                C     A      C   C          AACCGAACA      -       U
Stem-loop sequence	UAAAGAUCUGUCUUCUUCGAUCGGUUCUGAGUUGUUAAAACUGAUUUGGAGAUAUGAUGUGAAAUCUGUUGUUGAGUAUAACUUACUUAAGAUAGAACAAGCCAAUUUCACAUCACAUCCCCAAAUAAGUUUCAACAACUCGGAACCGAAGAAGACAAAUCUUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY063833.1	ncRNA:20   AGUCUUGGCUAGCUUCUUCU   1   |||||||||||*|||||||| targets:946   UCAGAACCGAUAGAAGAAGA   965 Target Full Sequence	1.5	Arabidopsis thaliana putative carboxypeptidase (At5g09640) mRNA, complete cds	NA	coding protein	psRNATarget
NM_121001.2	ncRNA:20   AGUCUUGGCUAGCUUCUUCU   1   |||||||||||*|||||||| targets:946   UCAGAACCGAUAGAAGAAGA   965 Target Full Sequence	1.5	Arabidopsis thaliana serine carboxypeptidase-like 19 (SCPL19), mRNA	serine carboxypeptidase-like 19(SCPL19)	coding protein	psRNATarget
AY091309.1	ncRNA:20   AGUCUUGGCUAGCUUCUUCU   1   |||||||||||*|||||||| targets:887   UCAGAACCGAUAGAAGAAGA   906 Target Full Sequence	1.5	Arabidopsis thaliana putative carboxypeptidase (At5g09640) mRNA, complete cds	NA	coding protein	psRNATarget
AY033947.1	ncRNA:20   AGUCUUGGCUAGCUUCUUCU   1   |||||||||||*|||||||| targets:887   UCAGAACCGAUAGAAGAAGA   906 Target Full Sequence	1.5	Arabidopsis thaliana sinapoylglucose:choline sinapoyltransferase (SNG2) mRNA, complete cds	NA	coding protein	psRNATarget
NM_101734.1	ncRNA:20   AGUCUUGGCUAGCUUCUUCU   1   ***||||||||||||||||| targets:334   GAUGAACCGAUCGAAGAAGA   353 Target Full Sequence	2.0	Arabidopsis thaliana Zinc finger, C3HC4 type (RING finger) family protein partial mRNA	Zinc finger, C3HC4 type (RING finger) family protein(AT1G18760)	coding protein	psRNATarget
NM_106415.3	ncRNA:20   AGUCUUGGCUAGCUUCUUCU   1   *|=|||||||||*||||||| targets:904   CCGGAACCGAUCAAAGAAGA   923 Target Full Sequence	2.5	Arabidopsis thaliana Histone H3 K4-specific methyltransferase SET7/9 family protein mRNA	Histone H3 K4-specific methyltransferase SET7/9 family protein(AT1G77660)	coding protein	psRNATarget
AK230016.1	ncRNA:20   AGUCUUGGCUAGCUUCUUCU   1   *|=|||||||||*||||||| targets:797   CCGGAACCGAUCAAAGAAGA   816 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-53-B04	NA	coding protein	psRNATarget