Search result

BaseInfo

ncRNA ID ath-miR5632-3p
Species Arabidopsis thaliana
Class miRNA
Genome position chr2:8392449-8392608 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 9 - UUGGAUUUAUAGUUGGAUAAG - 29
Stem-loop(if miRNA) U                          G    C     A       U            ---------AUCAACUA GCUUGAG
 UGAUUCUCUUAUCCAACUGUAAAUCC AAAC CUAAU UUCCUUG ACCACAUUCCUA                 G       C
 |||||||||||||||||||||||||| |||| ||||| ||||||| ||||||||||||                 |
 ACUAAGAGAAUAGGUUGAUAUUUAGG UUUG GAUUA AAGGAAC UGGUGUAAGGAU                 C       C
A                          -    U     A       U            GACAAAAAAAACAAAAA AAAAAGC
Stem-loop sequence UUGAUUCUCUUAUCCAACUGUAAAUCCGAAACCCUAAUAUUCCUUGUACCACAUUCCUAAUCAACUAGGCUUGAGCCCGAAAAACAAAAACAAAAAAAACAGUAGGAAUGUGGUUCAAGGAAAAUUAGUGUUUGGAUUUAUAGUUGGAUAAGAGAAUCAA

Reference

1 PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis";
Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN;
Genome Res. 22:163-176(2012).
2 PMID:24119003
"Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots";
Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA;
BMC Genomics. 14:701(2013).