ncRNA ID | ath-miR5632-3p |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr2:8392449-8392608 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 9 - UUGGAUUUAUAGUUGGAUAAG - 29 |
Stem-loop(if miRNA) |
U                          G    C     A       U            ---------AUCAACUA GCUUGAG  UGAUUCUCUUAUCCAACUGUAAAUCC AAAC CUAAU UUCCUUG ACCACAUUCCUA                 G       C  |||||||||||||||||||||||||| |||| ||||| ||||||| ||||||||||||                 |  ACUAAGAGAAUAGGUUGAUAUUUAGG UUUG GAUUA AAGGAAC UGGUGUAAGGAU                 C       C A                          -    U     A       U            GACAAAAAAAACAAAAA AAAAAGC |
Stem-loop sequence | UUGAUUCUCUUAUCCAACUGUAAAUCCGAAACCCUAAUAUUCCUUGUACCACAUUCCUAAUCAACUAGGCUUGAGCCCGAAAAACAAAAACAAAAAAAACAGUAGGAAUGUGGUUCAAGGAAAAUUAGUGUUUGGAUUUAUAGUUGGAUAAGAGAAUCAA |
1 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |
2 | PMID:24119003
"Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots"; Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA; BMC Genomics. 14:701(2013). |