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BaseInfo

ncRNA ID ath-miRf11189-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 23
Mature sequence(if miRNA) NA - UACUCGACCUGAGGGUCGAGUAG - NA
Stem-loop(if miRNA)   --U          GA          G  -     G  ----       AAA   A
GG   UACUCGACCU  GGGUCGAGUA AU GGGUA AA    UGGCUCC   GUC C
||   ||||||||||  |||||||||| || ||||| ||    |||||||   |||
CC   AUGAGCUGGA  UCCGGCUCAU UA CUCGU UU    ACUGGGG   CAG U
  UGU          -G          G  G     G  AUGA       GAC   C
Stem-loop sequence GGUUACUCGACCUGAGGGUCGAGUAGAUGGGUAGAAUGGCUCCAAAGUCACUCGACCAGGGGGUCAAGUAUUGUGCUCGAUGUACUCGGCCUGAGGUCGAGUAUGUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT025674.1
ncRNA:23   GAUGAGCUGGGAGUCCAGCUCAU   1
  |||||||||||*|||||||||||
targets:187   CUACUCGACCCCCAGGUCGAGUA   209

1.5 Arabidopsis thaliana NA coding protein psRNATarget
NM_103391.1
ncRNA:23   GAUGAGCUGGGAGUCCAGCUCAU   1
  |*|||||||||*|||||||||||
targets:1104   CCACUCGACCCCCAGGUCGAGUA   1126

1.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
BT015478.1
ncRNA:23   GAUGAGCUGGGAGUCCAGCUCAU   1
  *||||||||||*||||||||||=
targets:136   AUACUCGACCCCCAGGUCGAGUG   158

2.5 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
BT014714.1
ncRNA:23   GAUGAGCUGGGAGUCCAGCUCAU   1
  *||||||||||*||||||||||=
targets:136   AUACUCGACCCCCAGGUCGAGUG   158

2.5 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget