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BaseInfo

ncRNA ID ath-miR5013
Species Arabidopsis thaliana
Class miRNA
Genome position chr2:7166817-7166975 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 52 - UUUGUGACAUCUAGGUGCUUU - 72
Stem-loop(if miRNA)    U    --U      G    UG    GC AUACA                        C              U   UUC
GGA CUGU   CAUAAC AAGU  UUGG  G     UCAUUUAGUAGACAAGGUUUGUGA AUCUAGGUGCUUUU UUU   U
||| ||||   |||||| ||||  ||||  |     |||||||||||||||||||||||| |||||||||||||| |||   U
UCU GACA   GUGUUG UUCG  GAUC  C     AGUAAAUCAUCUGUUCCAAAUACU UAGAUCCACGAGAA AAA   C
   U    UUC      -    UG    UA -----                        A              C   UAU
Stem-loop sequence GGAUCUGUUCAUAACGAAGUUGUUGGGCGAUACAUCAUUUAGUAGACAAGGUUUGUGACAUCUAGGUGCUUUUUUUUUUCUUCUAUAAACAAGAGCACCUAGAUAUCAUAAACCUUGUCUACUAAAUGACAUCUAGGUGCUUGUUGUGCUUACAGUUCU

Reference

1 PMID:21357774
"MicroRNA activity in the Arabidopsis male germline";
Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD;
J Exp Bot. 62:1611-1620(2011).