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BaseInfo

ncRNA ID	ath-miRf11181-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	23
Mature sequence(if miRNA)	NA - UACUCGACCAGGGGGUUGAGUGG - NA
Stem-loop(if miRNA)	C  AGUG           GG      A   GCAU    G    -G   GAGCUGAGGAUACUCGACCUAAGGGUCGAGUAGAUG GG GA    GUACUCGACCA  GGGUUG GUG    CAUC AGUG  CCU                                    G || ||    |||||||||||  |||||| |||    |||| ||||  |||                                    G CC CU    UAUGAGCUGGU  UCCAGC CAC    GUAG UCGC  UAU                                    A   U  ---G           GG      A   ----    G    GG   GAGCUGGGGGACCAGCUCACUGAAACCUCGGUAAGA
Stem-loop sequence	GGCGAAGUGGUACUCGACCAGGGGGUUGAGUGGCAUCAUCGAGUGGCCUGAGCUGAGGAUACUCGACCUAAGGGUCGAGUAGAUGGGAAGAAUGGCUCCAAAGUCACUCGACCAGGGGGUCGAGUAUGGCGCUGGAUGCACACGACCUGGUGGUCGAGUAUGUCUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT014714.1	ncRNA:23   GGUGAGUUGGGGGACCAGCUCAU   1   ==||||||||||||||||||||| targets:301   UUACUCAACCCCCUGGUCGAGUA   323 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:23   GGUGAGUUGGGGGACCAGCUCAU   1   ==||||||||||||||||||||| targets:301   UUACUCAACCCCCUGGUCGAGUA   323 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:23   GGUGAGUUGGGGGACCAGCUCAU   1   ||||||=|||||||||||||||| targets:90   CCACUCGACCCCCUGGUCGAGUA   112 Target Full Sequence	1.0	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:23   GGUGAGUUGGGGGACCAGCUCAU   1   ||||||=|||||||||||||||| targets:230   CCACUCGACCCCCUGGUCGAGUA   252 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:23   GGUGAGUUGGGGGACCAGCUCAU   1   |=||||=|||||||||||||||| targets:181   CUACUCGACCCCCUGGUCGAGUA   203 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:23   GGUGAGUUGGGGGACCAGCUCAU   1   ||||||=|||||||||||||||| targets:230   CCACUCGACCCCCUGGUCGAGUA   252 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:23   GGUGAGUUGGGGGACCAGCUCAU   1   |=||||=|||||||||||||||| targets:181   CUACUCGACCCCCUGGUCGAGUA   203 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:23   GGUGAGUUGGGGGACCAGCUCAU   1   ||||||=|||||||||||||||| targets:124   CCACUCGACCCCCUGGUCGAGUA   146 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:23   GGUGAGUUGGGGGACCAGCUCAU   1   ||||||=|||||||||||||||| targets:499   CCACUCGACCCCCUGGUCGAGUA   521 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:23   GGUGAGUUGGGGGACCAGCUCAU   1   ||||||=|||||||||||||||| targets:499   CCACUCGACCCCCUGGUCGAGUA   521 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:23   GGUGAGUUGGGGGACCAGCUCAU   1   =|||||=|||||||||||||||| targets:1571   UCACUCGACCCCCUGGUCGAGUA   1593 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:23   GGUGAGUUGGGGGACCAGCUCAU   1   ==||||=|||||||||||||||| targets:308   UUACUCGACCCCCUGGUCGAGUA   330 Target Full Sequence	1.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
EF183192.1	ncRNA:23   GGUGAGUUGGGGGACCAGCUCAU   1   |||*||||||||*|||||||||| targets:169   CCAGUCAACCCCGUGGUCGAGUA   191 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:23   GGUGAGUUGGGGGACCAGCUCAU   1   |||*||||||||*|||||||||| targets:544   CCAGUCAACCCCGUGGUCGAGUA   566 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:23   GGUGAGUUGGGGGACCAGCUCAU   1   |||*||||||||*|||||||||| targets:544   CCAGUCAACCCCGUGGUCGAGUA   566 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:23   GGUGAGUUGGGGGACCAGCUCAU   1   ==||*|=|||||||||||||||| targets:583   UUACYCGACCCCCUGGUCGAGUA   605 Target Full Sequence	2.0	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
BT025674.1	ncRNA:23   GGUGAGUUGGGGGACCAGCUCAU   1   |=||||=||||||*||||||||| targets:187   CUACUCGACCCCCAGGUCGAGUA   209 Target Full Sequence	2.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
AY231407.1	ncRNA:23   GGUGAGUUGGGGGACCAGCUCAU   1   ||||||=|||||*|||||||||| targets:489   CCACUCGACCCCGUGGUCGAGUA   511 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
AY231407.1	ncRNA:23   GGUGAGUUGGGGGACCAGCUCAU   1   ||||||=|||||*|||||||||| targets:535   CCACUCGACCCCAUGGUCGAGUA   557 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:23   GGUGAGUUGGGGGACCAGCUCAU   1   ||||||=||||||*||||||||| targets:1104   CCACUCGACCCCCAGGUCGAGUA   1126 Target Full Sequence	2.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget