Search result

BaseInfo

ncRNA ID	ath-miRf11178-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	22
Mature sequence(if miRNA)	NA - ACUCGACCUGGGGGUCGAGUAG - NA
Stem-loop(if miRNA)	U     U         GGG        A   --G  U  A AGC ACGGU ACUCGACCU   GGUCGAGU GAU   GG AG A ||| ||||| |||||||||   |||||||| |||   || || U UCG UGUUA UGAGCUGGG   CCAGCUCA CUG   CC UC G    -     -         GGA        -   AAA  -  G
Stem-loop sequence	AGCUACGGUUACUCGACCUGGGGGUCGAGUAGAUGGGUAGAAUGGCUCCAAAGUCACUCGACCAGGGGGUCGAGUAUUGUGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT025674.1	ncRNA:22   GAUGAGCUGGGGGUCCAGCUCA   1   |||||||||||||||||||||| targets:187   CUACUCGACCCCCAGGUCGAGU   208 Target Full Sequence	0.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT014714.1	ncRNA:22   GAUGAGCUGGGGGUCCAGCUCA   1   *||||||||||||||||||||| targets:136   AUACUCGACCCCCAGGUCGAGU   157 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:22   GAUGAGCUGGGGGUCCAGCUCA   1   *||||||||||||||||||||| targets:136   AUACUCGACCCCCAGGUCGAGU   157 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:22   GAUGAGCUGGGGGUCCAGCUCA   1   |*|||||||||||||||||||| targets:1104   CCACUCGACCCCCAGGUCGAGU   1125 Target Full Sequence	0.0	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT025674.1	ncRNA:22   GAUGAGCUGGGGGUCCAGCUCA   1   =||||||||||||*|||||||| targets:308   UUACUCGACCCCCUGGUCGAGU   329 Target Full Sequence	1.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT014714.1	ncRNA:22   GAUGAGCUGGGGGUCCAGCUCA   1   |||||||||||||*|||||||| targets:181   CUACUCGACCCCCUGGUCGAGU   202 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:22   GAUGAGCUGGGGGUCCAGCUCA   1   |*|||||||||||*|||||||| targets:230   CCACUCGACCCCCUGGUCGAGU   251 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:22   GAUGAGCUGGGGGUCCAGCUCA   1   |||||||||||||*|||||||| targets:181   CUACUCGACCCCCUGGUCGAGU   202 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:22   GAUGAGCUGGGGGUCCAGCUCA   1   |*|||||||||||*|||||||| targets:230   CCACUCGACCCCCUGGUCGAGU   251 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:22   GAUGAGCUGGGGGUCCAGCUCA   1   |*|||||||||||*|||||||| targets:90   CCACUCGACCCCCUGGUCGAGU   111 Target Full Sequence	1.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
EF183194.1	ncRNA:22   GAUGAGCUGGGGGUCCAGCUCA   1   |*||||||||*||||||||||| targets:449   CCACUCGACCACCAGGUCGAGU   470 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:22   GAUGAGCUGGGGGUCCAGCUCA   1   |*|||||||||||*|||||||| targets:124   CCACUCGACCCCCUGGUCGAGU   145 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
AY227642.1	ncRNA:22   GAUGAGCUGGGGGUCCAGCUCA   1   |*||||||||||*||||||||| targets:854   CCACUCGACCCCGAGGUCGAGU   875 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183193.1	ncRNA:22   GAUGAGCUGGGGGUCCAGCUCA   1   |*|||||||||||*|||||||| targets:499   CCACUCGACCCCCUGGUCGAGU   520 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:22   GAUGAGCUGGGGGUCCAGCUCA   1   |*|||||||||||*|||||||| targets:499   CCACUCGACCCCCUGGUCGAGU   520 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:22   GAUGAGCUGGGGGUCCAGCUCA   1   =*|||||||||||*|||||||| targets:1571   UCACUCGACCCCCUGGUCGAGU   1592 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:22   GAUGAGCUGGGGGUCCAGCUCA   1   =*||||||||||*||||||||| targets:1617   UCACUCGACCCCGAGGUCGAGU   1638 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:22   GAUGAGCUGGGGGUCCAGCUCA   1   =|||||*||||||*|||||||| targets:301   UUACUCAACCCCCUGGUCGAGU   322 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:22   GAUGAGCUGGGGGUCCAGCUCA   1   =|||||*||||||*|||||||| targets:301   UUACUCAACCCCCUGGUCGAGU   322 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:22   GAUGAGCUGGGGGUCCAGCUCA   1   =|||*||||||||*|||||||| targets:583   UUACYCGACCCCCUGGUCGAGU   604 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget