Search result

BaseInfo

ncRNA ID	ath-miRf11176-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - UCGACCUGGGGGUCGAGCGA - NA
Stem-loop(if miRNA)	U           G   U -A     UG  G   GA    -               G     -AA  G    AGUGG GA CACUCGACC GGGGGUCGAGC AGG G  UCGAG  GU UCA  AGAU ACUCGACUUCCAGGU GAGUG   GA GUCG     U  A ||||||||| ||||||||||| ||| |  |||||  || |||  |||| ||||||||||||||| |||||   || ||||     | GUGAGCUGG UCUCCAGCUCG UCC C  AGUUC  UA GGU  UCUG UGAGCUGGGGGUCCA CUCGU   CU UAGU     A  G          U           -   U GA     --  G   UC    G               G     AUC  G    GGUGA GU
Stem-loop sequence	CACUCGACCUGGGGGUCGAGCGAGGUGAUCGAGUGGUGUCAGAAGAUACUCGACUUCCAGGUGGAGUGAAGAGGUCGAGUGGUGAAGUGAAGUGGUGAUGUCCUAUGCUCGACCUGGGGGUCGAGUGGUCUCUUGGGAUCUUGAAGCUCCUGCUCGACCUCUUGGUCGAGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_103391.1	ncRNA:20   AGCGAGCUGGGGGUCCAGCU   1   *|*||||||||||||||||| targets:1104   CCACUCGACCCCCAGGUCGA   1123 Target Full Sequence	1.0	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT025674.1	ncRNA:20   AGCGAGCUGGGGGUCCAGCU   1   *=*||||||||||||||||| targets:187   CUACUCGACCCCCAGGUCGA   206 Target Full Sequence	2.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT014714.1	ncRNA:20   AGCGAGCUGGGGGUCCAGCU   1   *=*||||||||||||||||| targets:136   AUACUCGACCCCCAGGUCGA   155 Target Full Sequence	2.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:20   AGCGAGCUGGGGGUCCAGCU   1   *=*||||||||||||||||| targets:136   AUACUCGACCCCCAGGUCGA   155 Target Full Sequence	2.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:20   AGCGAGCUGGGGGUCCAGCU   1   *|*|||||||||*||||||| targets:1059   GCACUCGACCCCGAGGUCGA   1078 Target Full Sequence	2.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT014714.1	ncRNA:20   AGCGAGCUGGGGGUCCAGCU   1   *|*||||||||||*|||||| targets:230   CCACUCGACCCCCUGGUCGA   249 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:20   AGCGAGCUGGGGGUCCAGCU   1   *|*||||||||||*|||||| targets:230   CCACUCGACCCCCUGGUCGA   249 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:20   AGCGAGCUGGGGGUCCAGCU   1   ||*||||||||||*|||||| targets:1571   UCACUCGACCCCCUGGUCGA   1590 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:20   AGCGAGCUGGGGGUCCAGCU   1   ||*|||||||||*||||||| targets:1617   UCACUCGACCCCGAGGUCGA   1636 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:20   AGCGAGCUGGGGGUCCAGCU   1   *|*||||||||||*|||||| targets:124   CCACUCGACCCCCUGGUCGA   143 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:20   AGCGAGCUGGGGGUCCAGCU   1   *|*||||||||||*|||||| targets:499   CCACUCGACCCCCUGGUCGA   518 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:20   AGCGAGCUGGGGGUCCAGCU   1   *|*||||||||||*|||||| targets:499   CCACUCGACCCCCUGGUCGA   518 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:20   AGCGAGCUGGGGGUCCAGCU   1   *|*||||||||||*|||||| targets:90   CCACUCGACCCCCUGGUCGA   109 Target Full Sequence	2.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
EF183194.1	ncRNA:20   AGCGAGCUGGGGGUCCAGCU   1   *|*|||||||*||||||||| targets:449   CCACUCGACCACCAGGUCGA   468 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
AY227642.1	ncRNA:20   AGCGAGCUGGGGGUCCAGCU   1   *|*|||||||||*||||||| targets:854   CCACUCGACCCCGAGGUCGA   873 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget