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BaseInfo

ncRNA ID	ath-miRf11175-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	24
Mature sequence(if miRNA)	NA - ACUCGACCAGGGGGUCGAGUGGUG - NA
Stem-loop(if miRNA)	UG GA         AGGG          -U   GAGAA GUU  U  UACUCGACC    GGUCGAGUGG  GGU     G |||  |  |||||||||    ||||||||||  |||     U CAA  G  GUGAGCUGG    CCAGCUCAUC  CCG     U    GU --         GGGA          UU   UAGUG
Stem-loop sequence	GUUUGUGAUACUCGACCAGGGGGUCGAGUGGUGGUGAGAAGUUGUGAUGCCUUCUACUCGACCAGGGGGUCGAGUGGUGAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ069808.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   |||||||||||||||||||||||| targets:88   CACCACUCGACCCCCUGGUCGAGU   111 Target Full Sequence	0.0	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   |=|||||||||||||||||||||| targets:228   CGCCACUCGACCCCCUGGUCGAGU   251 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:24   GUGG-UGAGCUGGGGGACCAGCUCA   1   ||=|-|||||||||||||||||||| targets:178   CAUCUACUCGACCCCCUGGUCGAGU   202 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   |=|||||||||||||||||||||| targets:228   CGCCACUCGACCCCCUGGUCGAGU   251 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:24   GUGG-UGAGCUGGGGGACCAGCUCA   1   ||=|-|||||||||||||||||||| targets:178   CAUCUACUCGACCCCCUGGUCGAGU   202 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   *||||||||||||||||||||||| targets:122   AACCACUCGACCCCCUGGUCGAGU   145 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   *||||||||||||||||||||||| targets:497   AACCACUCGACCCCCUGGUCGAGU   520 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   *||||||||||||||||||||||| targets:497   AACCACUCGACCCCCUGGUCGAGU   520 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:24   GUGG--UGAGCUGGGGGACCAGCUCA   1   ||||--|||||||||||||||||||| targets:304   CACCUUACUCGACCCCCUGGUCGAGU   329 Target Full Sequence	0.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
EF183042.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   *|=||||||||||||||||||||| targets:1569   GAUCACUCGACCCCCUGGUCGAGU   1592 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   ====||||*||||||||||||||| targets:299   UGUUACUCAACCCCCUGGUCGAGU   322 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   ====||||*||||||||||||||| targets:299   UGUUACUCAACCCCCUGGUCGAGU   322 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   ||==||*||||||||||||||||| targets:581   CAUUACYCGACCCCCUGGUCGAGU   604 Target Full Sequence	1.0	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
BT025674.1	ncRNA:24   GUGG-UGAGCUGGGGGACCAGCUCA   1   ||=|-|||||||||||*|||||||| targets:184   CAUCUACUCGACCCCCAGGUCGAGU   208 Target Full Sequence	1.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
AY231407.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   ||||||||||||||*||||||||| targets:533   CACCACUCGACCCCAUGGUCGAGU   556 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
AY231407.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   *|||||||||||||*||||||||| targets:487   GACCACUCGACCCCGUGGUCGAGU   510 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   *||||||||||||||*|||||||| targets:1102   GACCACUCGACCCCCAGGUCGAGU   1125 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   *|||||||||||||*||||||||| targets:1207   AACCACUCGACCCCGUGGUCGAGU   1230 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget