Search result

BaseInfo

ncRNA ID	novel_gar_miR2249
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr4:104451186-104451403 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587
Length	24
Mature sequence(if miRNA)	1 - AAAGGAGAAGGAGAAGAGAAUGGA - 24
Stem-loop(if miRNA)	--               U    -CUAU    - AC      C                A         A     C   -UG      UUAA  U  A     UUAUUUUUUU   CAUUUUCUUCUCUUU CUCC     UUUU C  CCUUCU UAUUUCUUUUAACAUA UUUUUUUAU UUUUC AUU   UUAAAA    UC CU UACUU          A   ||||||||||||||| ||||     |||| |  |||||| |||||||||||||||| ||||||||| ||||| |||   ||||||    || || |||||   GUAAGAGAAGAGGAA GAGG     AAAA G  GGAAGA GUAAAGAAAAUUGUAU AAAAAGAUA AAAAG UGA   AGUUUU    AG GG GUGAG          A AG               -    AAAAC    U AA      A                C         C     A   UCA      --UG  C  A     UUUUUUUAAC
Stem-loop sequence	CAUUUUCUUCUCUUUUCUCCCUAUUUUUCACCCUUCUCUAUUUCUUUUAACAUAAUUUUUUUAUAUUUUCCAUUUGUUAAAAUUAAUCUCUAUACUUUUAUUUUUUUAACAAUUUUUUUGAGUGAGGCGAGUUUUUGAACUAGUAGAAAACAUAGAAAAACUAUGUUAAAAGAAAUGAAGAAGGAAGUAAAACAAAAGGAGAAGGAGAAGAGAAUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017782190.1	ncRNA:24   AGGU--AAGAGAAGAGGAAGAGGAAA   1   ||||--|||||||||||*|||||||| targets:211   UCCAAAUUCUCUUCUCCAUCUCCUUU   236 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized LOC108479524 (LOC108479524), mRNA	uncharacterized LOC108479524(LOC108479524)	coding protein	psRNATarget
XM_017756222.1	ncRNA:24   AGGUAAG--AGAAGAGGAAGAGGAAA   1   ||=|*||--||||||||||||||||| targets:652   UCUACUCCCUCUUCUCCUUCUCCUUU   677 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum zinc finger CCCH domain-containing protein 53-like (LOC108457257), mRNA	zinc finger CCCH domain-containing protein 53-like(LOC108457257)	coding protein	psRNATarget
XM_017757758.1	ncRNA:24   AGGUAAGAGAAGAGGAAGAGGAAA   1   ||=-|||||||||=|||||||||* targets:687   UCU-UUCUCUUCUUCUUCUCCUUC   709 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X1, mRNA	uncharacterized LOC108458388(LOC108458388)	coding protein	psRNATarget
XM_017757759.1	ncRNA:24   AGGUAAGAGAAGAGGAAGAGGAAA   1   ||=-|||||||||=|||||||||* targets:687   UCU-UUCUCUUCUUCUUCUCCUUC   709 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X2, mRNA	uncharacterized LOC108458388(LOC108458388)	coding protein	psRNATarget
XM_017757760.1	ncRNA:24   AGGUAAGAGAAGAGGAAGAGGAAA   1   ||=-|||||||||=|||||||||* targets:601   UCU-UUCUCUUCUUCUUCUCCUUC   623 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X3, mRNA	uncharacterized LOC108458388(LOC108458388)	coding protein	psRNATarget
XM_017781138.1	ncRNA:24   AGGUAAGAG-AAGAGGAAGAGGAAA   1   *=|||||||-||||||||||||||* targets:158   CUCAUUCUCCUUCUCCUUCUCCUUC   182 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum classical arabinogalactan protein 5-like (LOC108478662), mRNA	classical arabinogalactan protein 5-like(LOC108478662)	coding protein	psRNATarget
XM_017774974.1	ncRNA:24   AGGUAAGAG-AAGAGGAAGAGGAAA   1   |||-|||||-||||||||||||||* targets:209   UCC-UUCUCCUUCUCCUUCUCCUUC   232 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum formin-like protein 1 (LOC108473429), mRNA	formin-like protein 1(LOC108473429)	coding protein	psRNATarget
XM_017790670.1	ncRNA:24   AGGUAAGAG-AAGAGGAAGAGGAAA   1   |||-|||||-||||||||||||||* targets:700   UCC-UUCUCCUUCUCCUUCUCCUUC   723 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-4-like (LOC108486551), mRNA	ethylene-responsive transcription factor RAP2-4-like(LOC108486551)	coding protein	psRNATarget