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BaseInfo

ncRNA ID	novel_gar_miR2221
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr4:85529952-85530041 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587
Length	24
Mature sequence(if miRNA)	1 - CACUUCUUCUCUGAUAUUUUGCAG - 24
Stem-loop(if miRNA)	-- A     --      A      G   G G  -A  --GG    G C   C CUUCU  UCUCUG UAUUUU CAG U CA  GU    CGGU G A   | |||||  |||||| |||||| ||| | ||  ||    |||| |   G GAGGA  GGAGAC GUGGAG GUU A GU  CA    GUCG U G CA C     UU      G      -   G G  GG  AACA    G G
Stem-loop sequence	CACUUCUUCUCUGAUAUUUUGCAGGUGCAAGUGGCGGUGGCAGGUGGCUGACAAACGGUGGAGUUGGAGGUGGCAGAGGUUAGGAGCGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017759717.1	ncRNA:24   GAC-GUUUUAUAGUCUCUUCUUCAC   1   |||-=|||=|||||||||=|||||| targets:1431   CUGGUAAAGUAUCAGAGAGGAAGUG   1455 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum serine/threonine-protein kinase SRK2I-like (LOC108460279), mRNA	serine/threonine-protein kinase SRK2I-like(LOC108460279)	coding protein	psRNATarget
XM_017759134.1	ncRNA:24   GAC--GUUUUAUAGUCUCUUCUUCAC   1   =||--|=|||*||||||*|||||||| targets:100   UUGUCCGAAACAUCAGACAAGAAGUG   125 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum myosin-binding protein 2-like (LOC108459720), transcript variant X2, mRNA	myosin-binding protein 2-like(LOC108459720)	coding protein	psRNATarget
XM_017759126.1	ncRNA:24   GAC--GUUUUAUAGUCUCUUCUUCAC   1   =||--|=|||*||||||*|||||||| targets:100   UUGUCCGAAACAUCAGACAAGAAGUG   125 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum myosin-binding protein 2-like (LOC108459720), transcript variant X1, mRNA	myosin-binding protein 2-like(LOC108459720)	coding protein	psRNATarget