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BaseInfo

ncRNA ID	novel_gar_miR2220
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr3:79232649-79232789 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587
Length	23
Mature sequence(if miRNA)	119 - AAAGACCAAUUUACUCUUUGAUC - 141
Stem-loop(if miRNA)	--    U   C         C     C       U     C     A  A A       ------  --A    A   UCAA GAG AAAUUGGUC UUUGU UUAAAAG UUCAU CAUUU UA U UUAAAAA      CU   GCAU A   |||| ||| ||||||||| ||||| ||||||| ||||| ||||| || | |||||||      ||   ||||   AGUU CUC UUUAACCAG AAAUA AAUUUUU AAGUA GUAAA AU A AAUUUUU      GA   UGUA U CU    U   A         -     A       U     A     A  A C       AACCAG  ACA    G
Stem-loop sequence	UCAAUGAGCAAAUUGGUCCUUUGUCUUAAAAGUUUCAUCCAUUUAUAAUAUUAAAAACUAGCAUAAUGAUGUACAAGGACCAAUUUUUAACAAUAAAAAUGAAUGAAUUUUUUAAAAUAAAGACCAAUUUACUCUUUGAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017777449.1	ncRNA:23   CUAGUUUCUCAUUUAACCAGAAA   1   *|||||||||*|||||||||||| targets:1634   AAUCAAAGAGCAAAUUGGUCUUU   1656 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum cytochrome P450 71D10-like (LOC108475481), mRNA	cytochrome P450 71D10-like(LOC108475481)	coding protein	psRNATarget
XM_017754642.1	ncRNA:23   CUAGUUUCUCAUUUAACCAGAAA   1   *||=||||||||||||||||*|| targets:796   AAUUAAAGAGUAAAUUGGUCCUU   818 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized LOC108456052 (LOC108456052), transcript variant X1, mRNA	uncharacterized LOC108456052(LOC108456052)	coding protein	psRNATarget
XM_017761420.1	ncRNA:23   CUAGUUUCUCAUUUAACCAGAAA   1   ||*|||||||||||||*|||||| targets:1452   GAACAAAGAGUAAAUUAGUCUUU   1474 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum alpha-L-fucosidase 3-like (LOC108461552), mRNA	alpha-L-fucosidase 3-like(LOC108461552)	coding protein	psRNATarget
XM_017747287.1	ncRNA:23   CUAGUUUCUCAUUUAACCAGAAA   1   |=|||||||**|||||||||||| targets:1156   GGUCAAAGAACAAAUUGGUCUUU   1178 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum bifunctional epoxide hydrolase 2-like (LOC108449909), mRNA	bifunctional epoxide hydrolase 2-like(LOC108449909)	coding protein	psRNATarget
XM_017772288.1	ncRNA:23   CUAGUUUCUCAUUUAACCAGAAA   1   *=*||||||*||||||||*|||| targets:3727   UGGCAAAGAAUAAAUUGGGCUUU   3749 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum lysine-specific demethylase JMJ25-like (LOC108470810), mRNA	lysine-specific demethylase JMJ25-like(LOC108470810)	coding protein	psRNATarget