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BaseInfo

ncRNA ID novel_gar_miR2219
Species Gossypium arboreum
Class miRNA
Genome position Chr3:79165015-79165186 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 24
Mature sequence(if miRNA) 1 - CUUCGGAUUAAUUCGAUGAGGCAU - 24
Stem-loop(if miRNA) --    GG      U    -G    A    G  CCAAUU   UUC           UAA   -  UAGGUGUCAAUUUAUUAUUUCGAAU
  CUUC  AUUAAU CGAU  AGGC UUGG UG      UAC   GAUUUAGCCAA   GAC AC                         U
  ||||  |||||| ||||  |||| |||| ||      |||   |||||||||||   ||| ||                         A
  GGGG  UAAUUG GCUA  UCUG GACU AC      AUG   CUAGGUUGGUU   GUG AG                         U
AU    -A      U    AG    A    G  -----U   UAC           -UU   U  UUAAACCAUGGGUUGUGGAGUAACC
Stem-loop sequence CUUCGGAUUAAUUCGAUGAGGCAUUGGGUGCCAAUUUACUUCGAUUUAGCCAAUAAGACACUAGGUGUCAAUUUAUUAUUUCGAAUUAUCCAAUGAGGUGUUGGGUACCAAAUUGAUGUGUUUUGGUUGGAUCCAUGUAUCAGUCAGAGUCUGAAUCGUGUUAAUAGGGGUA