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BaseInfo

ncRNA ID novel_gar_miR2214
Species Gossypium arboreum
Class miRNA
Genome position Chr3:44176549-44176653 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 24
Mature sequence(if miRNA) 1 - AAGAUGUUGAGGUAGAAAUUGGCA - 24
Stem-loop(if miRNA) --   A                 GCAAUUUAG G      GUAUAUCAUUUAGGUAUU
  AAG UGUUGAGGUAGAAAUUG         A CUGAAU                  U
  ||| |||||||||||||||||         | ||||||
  UUC GUAAUUUCAUUUUUGGC         U UUGAAG                  U
AG   -                 --------- -      AAACUUCUUUCGGACACC
Stem-loop sequence AAGAUGUUGAGGUAGAAAUUGGCAAUUUAGAGCUGAAUGUAUAUCAUUUAGGUAUUUUCCACAGGCUUUCUUCAAAGAAGUUUCGGUUUUUACUUUAAUGCUUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017777038.1
ncRNA:24   ACGGUUAAAGAUGGAGUUGUAGAA   1
  *|**||||||||||||||||*|||
targets:20   AGGAAAUUUCUACCUCAACAGCUU   43

1.5 PREDICTED: Gossypium arboreum uncharacterized LOC108475017 (LOC108475017), mRNA uncharacterized LOC108475017(LOC108475017) coding protein psRNATarget