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BaseInfo

ncRNA ID ath-miRf11157-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 21
Mature sequence(if miRNA) NA - UGUUGGUGUCGGUCGACACUG - NA
Stem-loop(if miRNA)         CCU     -              -      UUCU UA
AUCGACAC   GUUGG UGUCGGUCGACACU GUCGCG    G  G
||||||||   ||||| |||||||||||||| ||||||    |
UGGCUGUG   CGACC ACAGCUAGCUGUGG CGGUGC    C  U
        --U     C              U      -UGU UG
Stem-loop sequence AUCGACACCCUGUUGGUGUCGGUCGACACUGUCGCGUUCUGUAGUGUCUGUCGUGGCUGGUGUCGAUCGACACCCAGCUGUGUCGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
DQ069810.1
ncRNA:21   GUCACAGCUGGCUGUGGUUGU   1
  =||||||||*||||||||||*
targets:187   UAGUGUCGAACGACACCAACC   207

2.5 Arabidopsis thaliana At2g13270 mRNA, partial sequence NA coding protein psRNATarget
DQ069810.1
ncRNA:21   GUCACAGCUGGCUGUGGUUGU   1
  =|||||||||||||||||*|*
targets:314   UAGUGUCGACCGACACCACCU   334

2.5 Arabidopsis thaliana At2g13270 mRNA, partial sequence NA coding protein psRNATarget
AB206811.2
ncRNA:21   GUCACAGCUGGCUGUGGUUGU   1
  |||**|||||||||||||||*
targets:999   CAGAAUCGACCGACACCAACU   1019

3.0 Arabidopsis thaliana GCS1 mRNA for generative cell specific-1, complete cds NA coding protein psRNATarget
NM_117241.2
ncRNA:21   GUCACAGCUGGCUGUGGUUGU   1
  |||**|||||||||||||||*
targets:1035   CAGAAUCGACCGACACCAACU   1055

3.0 Arabidopsis thaliana hapless 2 (HAP2), mRNA hapless 2(HAP2) coding protein psRNATarget
DQ022375.1
ncRNA:21   GUCACAGCUGGCUGUGGUUGU   1
  |||**|||||||||||||||*
targets:1035   CAGAAUCGACCGACACCAACU   1055

3.0 Arabidopsis thaliana HAP2 (At4g11720) mRNA, complete cds NA coding protein psRNATarget