ncRNA ID | novel_gar_miR2147 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr1:64514634-64514686 [+] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR1029587 |
Length | 24 |
Mature sequence(if miRNA) | 30 - CAUUGGGUUGGAGUUGUUUGGCAU - 53 |
Stem-loop(if miRNA) |
--  UG UU              AAAG   GU  A  CAGCUUCGAUUCAA    U   ||  |  ||||||||||||||   CG  U  GUUGAGGUUGGGUU    G UA  GU -U              ACAC |
Stem-loop sequence | GUUGAUUCAGCUUCGAUUCAAAAAGUGCACAUUGGGUUGGAGUUGUUUGGCAU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_017750526.1 |
|
1.5 | PREDICTED: Gossypium arboreum UV excision repair protein rhp23-like (LOC108452728), mRNA | UV excision repair protein rhp23-like(LOC108452728) | coding protein | psRNATarget |