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BaseInfo

ncRNA ID novel_gar_miR2147
Species Gossypium arboreum
Class miRNA
Genome position Chr1:64514634-64514686 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 24
Mature sequence(if miRNA) 30 - CAUUGGGUUGGAGUUGUUUGGCAU - 53
Stem-loop(if miRNA) --  UG UU              AAAG
  GU  A  CAGCUUCGAUUCAA    U
  ||  |  ||||||||||||||
  CG  U  GUUGAGGUUGGGUU    G
UA  GU -U              ACAC
Stem-loop sequence GUUGAUUCAGCUUCGAUUCAAAAAGUGCACAUUGGGUUGGAGUUGUUUGGCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017750526.1
ncRNA:24   UACGGUUUGUUGAGGUUGGGUUAC   1
  =|**=|||||||*|||||||||||
targets:239   GUAAUAAACAACCCCAACCCAAUG   262

1.5 PREDICTED: Gossypium arboreum UV excision repair protein rhp23-like (LOC108452728), mRNA UV excision repair protein rhp23-like(LOC108452728) coding protein psRNATarget