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BaseInfo

ncRNA ID	ath-miR5020c
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr2:4770538-4770646 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	13 - UGGCAUGGAAGAAGGUGAGAC - 33
Stem-loop(if miRNA)	G      GGC      AU           A      -CC   --      AAUCA  AGUGAU   CAUGGC  GGAAGAAGGUG GACUUG   UGA  AUCGUG     A  ||||||   ||||||  ||||||||||| ||||||   |||  ||||||  UCACUA   GUACCG  CCUUUUUCCAU CUGAAC   ACU  UAGUAC     A G      AUA      AU           G      AUC   AU      CUCCA
Stem-loop sequence	GAGUGAUGGCCAUGGCAUGGAAGAAGGUGAGACUUGCCUGAAUCGUGAAUCAAAACCUCCAUGAUUAUCACUACAAGUCGUACCUUUUUCCUAGCCAUGAUAAUCACUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_100275.3	ncRNA:21   CAGAGUGGAAGAAGGUACGGU   1   *|||||||||||||*|||||* targets:280   CUCUCACCUUCUUCGAUGCCC   300 Target Full Sequence	2.5	Arabidopsis thaliana HXXXD-type acyl-transferase family protein mRNA	HXXXD-type acyl-transferase family protein(AT1G03940)	coding protein	psRNATarget
AK221603.1	ncRNA:21   CAGAGUGGAAGAAGGUACGGU   1   *|||||||||||||*|||||* targets:33   CUCUCACCUUCUUCGAUGCCC   53 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-90-C24	NA	coding protein	psRNATarget
NM_100232.5	ncRNA:21   CAGAGUGGAAGAAGGUACGGU   1   *|||||||||||||*|||||* targets:356   CUCUCACCUUCUUCGAUGCCC   376 Target Full Sequence	2.5	Arabidopsis thaliana HXXXD-type acyl-transferase family protein partial mRNA	HXXXD-type acyl-transferase family protein(AT1G03495)	coding protein	psRNATarget
AK230418.1	ncRNA:21   CAGAGUGGAAGAAGGUACGGU   1   *|*|=|=|||||||||||||| targets:1381   UUGUUAUCUUCUUCCAUGCCA   1401 Target Full Sequence	3.0	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-31-N17	NA	coding protein	psRNATarget
NM_106003.3	ncRNA:21   CAGAGUGGAAGAAGGUACGGU   1   *|*|=|=|||||||||||||| targets:1380   UUGUUAUCUUCUUCCAUGCCA   1400 Target Full Sequence	3.0	Arabidopsis thaliana calmodulin-like protein mRNA	calmodulin-like protein(AT1G73440)	coding protein	psRNATarget

Reference

1	PMID:21940835 "High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012).