Search result

BaseInfo

ncRNA ID	novel_gar_miR2103
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr1:51830870-51830921 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029586
Length	24
Mature sequence(if miRNA)	29 - AAACGGCGUCGUUUUGGGGGCUGC - 52
Stem-loop(if miRNA)	--                   GCUGC   AAACGGCGUCGUUUUGGGG     C   |||||||||||||||||||   UUUGCUGCGGCAAAACCUC     U GU                   AAUUU
Stem-loop sequence	AAACGGCGUCGUUUUGGGGGCUGCCUUUUAACUCCAAAACGGCGUCGUUUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017780268.1	ncRNA:24   CGUCGGGGGUUUUGCUGCGGCAAA   1   *=****|||||||||||||||||| targets:22   UUCAAACCCAAAACGACGCCGUUU   45 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum uncharacterized LOC108477773 (LOC108477773), mRNA	uncharacterized LOC108477773(LOC108477773)	coding protein	psRNATarget
XM_017785371.1	ncRNA:24   CGUCGGGGGUUUUGCUGCGGCAAA   1   *==|||=||||||||||*|||||| targets:132   CUGGCCUCCAAAACGACCCCGUUU   155 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum pentatricopeptide repeat-containing protein At4g21065-like (LOC108482254), mRNA	pentatricopeptide repeat-containing protein At4g21065-like(LOC108482254)	coding protein	psRNATarget
XM_017777759.1	ncRNA:24   CGUCGGGGGUUUUGCUGCGGCAAA   1   ****=||=|||||||||*|||||| targets:74   CAUAUCCUCAAAACGACACCGUUU   97 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum peptide methionine sulfoxide reductase B5-like (LOC108475771), mRNA	peptide methionine sulfoxide reductase B5-like(LOC108475771)	coding protein	psRNATarget
XM_017748503.1	ncRNA:24   CGUC------GGGGGUUUUGCUGCGGCAAA   1   *|||------||==|||||||||||||||* targets:222   UCAGUUCAAACCUUCAAAACGACGCCGUUG   251 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum uncharacterized LOC108450748 (LOC108450748), transcript variant X1, mRNA	uncharacterized LOC108450748(LOC108450748)	coding protein	psRNATarget
XM_017748504.1	ncRNA:24   CGUC------GGGGGUUUUGCUGCGGCAAA   1   *|||------||==|||||||||||||||* targets:222   UCAGUUCAAACCUUCAAAACGACGCCGUUG   251 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum uncharacterized LOC108450748 (LOC108450748), transcript variant X5, mRNA	uncharacterized LOC108450748(LOC108450748)	coding protein	psRNATarget