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BaseInfo

ncRNA ID novel_gar_miR2093
Species Gossypium arboreum
Class miRNA
Genome position Chr1:34370240-34370322 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 24
Mature sequence(if miRNA) 1 - AACAGUUGGUAUACAUGGCUGCUA - 24
Stem-loop(if miRNA) --A      -      A         -  UAGAAAAG   AAA
   CAGUUG GUAUAC UGGCUGUUG GU        AUA   A
   |||||| |||||| ||||||||| ||        |||   A
   GUCGGU CAUAUG GUUGACAAU CG        UAU   U
AUC      A      -         U  -UUAAACA   AGU
Stem-loop sequence ACAGUUGGUAUACAUGGCUGUUGGUUAGAAAAGAUAAAAAAUUGAUAUACAAAUUGCUUAACAGUUGGUAUACAUGGCUGCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017784387.1
ncRNA:24   AUCGUCGGUACAUAUGGUUGACAA   1
  *||-||||||*|||*|||||||||
targets:849   AAG-AGCCAUCUAUUCCAACUGUU   871

2.5 PREDICTED: Gossypium arboreum pectinesterase QRT1-like (LOC108481226), mRNA pectinesterase QRT1-like(LOC108481226) coding protein psRNATarget
XM_017784386.1
ncRNA:24   AUCGUCGGUACAUAUGGUUGACAA   1
  *||-||||||*|||*|||||||||
targets:849   AAG-AGCCAUCUAUUCCAACUGUU   871

2.5 PREDICTED: Gossypium arboreum pectinesterase QRT1-like (LOC108481225), mRNA pectinesterase QRT1-like(LOC108481225) coding protein psRNATarget