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BaseInfo

ncRNA ID novel_gar_miR2084
Species Gossypium arboreum
Class miRNA
Genome position Chr1:50091043-50091119 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 24
Mature sequence(if miRNA) 54 - AUACUGUAUUCCUUUGAAACAAGC - 77
Stem-loop(if miRNA) --    U  A   C          GCAAAUCU    GUG A
  AUAC GU UUC UUUGAAACAA        UGAC   C A
  |||| || ||| ||||||||||        ||||   | U
  UAUG UA AAG AAAUUUUGUU        ACUG   G U
UU    C  -   A          ---AACUU    --A U
Stem-loop sequence AUACUGUAUUCCUUUGAAACAAGCAAAUCUUGACGUGCAAUUUGAGUCAUUCAAUUGUUUUAAAAGAAAUCGUAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017767062.1
ncRNA:24   CGAACAAAGUUUCCUUAUGUCAUA   1
  ****||||||||||||||||*||*
targets:1608   UAAGGUUUCAAAGGAAUACAUUAA   1631

2.5 PREDICTED: Gossypium arboreum potassium transporter 5 (LOC108466688), mRNA potassium transporter 5(LOC108466688) coding protein psRNATarget