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BaseInfo

ncRNA ID	novel_gar_miR2073
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr1:67143045-67143252 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587
Length	24
Mature sequence(if miRNA)	185 - AGGAGUCAAAUUGCAUUCUGCCCC - 208
Stem-loop(if miRNA)	--             C   C     C     -         U   C      A                     AG    -     U           A  UUUCA   AGGAGUCAAAUUG AUU UGCCC AUUUU CUCAAAAAA GGG AAAUUA UCCUUGUAUGUUAGAUCAAAG  CUAA UUGGU CUUUCUGUUAA AA     U   ||||||||||||| ||| ||||| ||||| ||||||||| ||| |||||| |||||||||||||||||||||  |||| ||||| ||||||||||| ||   UCCUCAGUUUAAC UAA ACGGG UGAAA GAGUUUUUU CCC UUUAAU AGGGAUAUGUAAUUUAGUUUU  GAUU GAUCA GGAAGACAAUU UU     C GA             U   A     -     U         U   A      C                     CU    U     -           G  UUUAC
Stem-loop sequence	AGGAGUCAAAUUGCAUUCUGCCCCAUUUUCUCAAAAAAUGGGCAAAUUAAUCCUUGUAUGUUAGAUCAAAGAGCUAAUUGGUUCUUUCUGUUAAAAAUUUCAUCCAUUUUUGUUAACAGAAGGACUAGUUUAGUCUUUUGAUUUAAUGUAUAGGGACUAAUUUACCCUUUUUUUGAGUAAAGUGGGCAAAAUUCAAUUUGACUCCUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017757759.1	ncRNA:24   CCCCGUCUUACGUUAAACUGAGGA   1   ||||=|*||||||||||||||||| targets:1684   GGGGUAAAAUGCAAUUUGACUCCU   1707 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X2, mRNA	uncharacterized LOC108458388(LOC108458388)	coding protein	psRNATarget
XM_017757758.1	ncRNA:24   CCCCGUCUUACGUUAAACUGAGGA   1   ||||=|*||||||||||||||||| targets:1744   GGGGUAAAAUGCAAUUUGACUCCU   1767 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X1, mRNA	uncharacterized LOC108458388(LOC108458388)	coding protein	psRNATarget
XM_017788261.1	ncRNA:24   CCCCGUCUUACGUUAAACUGAGGA   1   ||||=|*||||||||*|||||||| targets:495   GGGGUAAAAUGCAAUCUGACUCCU   518 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum probable polygalacturonase At1g80170 (LOC108484468), transcript variant X2, mRNA	probable polygalacturonase At1g80170(LOC108484468)	coding protein	psRNATarget