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BaseInfo

ncRNA ID	novel_gar_miR2054
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr12:26700153-26700232 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587
Length	23
Mature sequence(if miRNA)	1 - ACUCCGGUGACGGUUUCGGCAUG - 23
Stem-loop(if miRNA)	--                   - A       GUUAAAUUU   ACUCCGGUGACGGUUUCGG C UGGGGGU         A   ||||||||||||||||||| | |||||||         U   UGAGGCCACUGCCAAAGCC G ACCCCCA         U AC                   C C       AGACUAUGG
Stem-loop sequence	ACUCCGGUGACGGUUUCGGCAUGGGGGUGUUAAAUUUAUUGGUAUCAGAACCCCCACGCCCGAAACCGUCACCGGAGUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017768416.1	ncRNA:23   GU-ACGGCUUUGGCAGUGGCCUCA   1   ||-|*=|||||||||||||||||| targets:2915   CACUCUCGAAACCGUCACCGGAGU   2938 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum pentatricopeptide repeat-containing protein At3g22150, chloroplastic (LOC108467683), mRNA	pentatricopeptide repeat-containing protein At3g22150, chloroplastic(LOC108467683)	coding protein	psRNATarget
XM_017765525.1	ncRNA:23   GUACGGCUUUGGCAGUGGCCUCA   1   =*|*||||=|||||||||||||| targets:2375   UUUCCCGAGACCGUCACCGGAGU   2397 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum glutamate receptor 3.3-like (LOC108465207), transcript variant X1, mRNA	glutamate receptor 3.3-like(LOC108465207)	coding protein	psRNATarget
XM_017765527.1	ncRNA:23   GUACGGCUUUGGCAGUGGCCUCA   1   =*|*||||=|||||||||||||| targets:2209   UUUCCCGAGACCGUCACCGGAGU   2231 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum glutamate receptor 3.3-like (LOC108465207), transcript variant X3, mRNA	glutamate receptor 3.3-like(LOC108465207)	coding protein	psRNATarget
XM_017765019.1	ncRNA:23   GUACGGCUUUGGCAGUGGCCUCA   1   =*|*||||=|||||||||||||| targets:989   UUUCCCGAGACCGUCACCGGAGU   1011 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum glutamate receptor 3.1-like (LOC108464748), mRNA	glutamate receptor 3.1-like(LOC108464748)	coding protein	psRNATarget
XM_017750015.1	ncRNA:23   GUACGG-CUUUGGCAGUGGCCUCA   1   ||*|||-||||||||||||||||| targets:1274   CACGCCUGAAACCGUCACCGGAGU   1297 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum protein UPSTREAM OF FLC-like (LOC108452245), transcript variant X1, mRNA	protein UPSTREAM OF FLC-like(LOC108452245)	coding protein	psRNATarget
XM_017750016.1	ncRNA:23   GUACGG-CUUUGGCAGUGGCCUCA   1   ||*|||-||||||||||||||||| targets:1199   CACGCCUGAAACCGUCACCGGAGU   1222 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum protein UPSTREAM OF FLC-like (LOC108452245), transcript variant X2, mRNA	protein UPSTREAM OF FLC-like(LOC108452245)	coding protein	psRNATarget