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BaseInfo

ncRNA ID	ath-miR855
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr2:4674427-4674698 [+]
Reference genome	TAIR10
Source	miRBase
Length	22
Mature sequence(if miRNA)	7 - AGCAAAAGCUAAGGAAAAGGAA - 28
Stem-loop(if miRNA)	UUUUGGA         AAG  -      --A       AC     U   U      UUA    -------G A    -------   UCGACACACUCUUGGUGUCGAUCGACACCAGUUUCGGCCCAGCAAAAACCCUAGACGCUU        GCAAAAGCU   GA AAAGGA   GAUAAGG  GAUUU GGU CUGGAA   GCGA        G GUGU       CGA                                                            U        |||||||||   || ||||||   |||||||  ||||| ||| ||||||   ||||        | ||||       |||        CGUUUUCGA   CU UUUUCU   CUAUUUU  UUGAA CCA GAUUUU   UGUU        C UGGG       CAG                                                            C ACCAAAA         --A  A      GAA       CU     U   -      ---    AUAUAUAU -    AUUUUUG   GUGCCUGAUUAUUACGUUUAUUACUUUAGAAGAUCCCGUUUGAACUCGAGAACAUUUGAG
Stem-loop sequence	UUUUGGAGCAAAAGCUAAGGAAAAGGAAGAUAAGGACGAUUUUGGUUCUGGAAUUAGCGAGGAGUGUCGAUCGACACACUCUUGGUGUCGAUCGACACCAGUUUCGGCCCAGCAAAAACCCUAGACGCUUUCGAGUUUACAAGAGCUCAAGUUUGCCCUAGAAGAUUUCAUUAUUUGCAUUAUUAGUCCGUGGACGUUUUUAGGGUCUAUAUAUAUUGUUUUUAGACCUAAGUUUCUUUUAUCAAGUCUUUUAUCAAGCUUUUGCAAAACCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001160765.2	ncRNA:22   AAGGAAAAG-GAAUCGAAAACGA   1   ||*||||||-||||||||||||| targets:484   UUGCUUUUCUCUUAGCUUUUGCU   506 Target Full Sequence	3.0	Arabidopsis thaliana ERD (early-responsive to dehydration stress) family protein mRNA	ERD (early-responsive to dehydration stress) family protein(AT4G15430)	coding protein	psRNATarget
NM_117632.5	ncRNA:22   AAGGAAAAG-GAAUCGAAAACGA   1   ||*||||||-||||||||||||| targets:374   UUGCUUUUCUCUUAGCUUUUGCU   396 Target Full Sequence	3.0	Arabidopsis thaliana ERD (early-responsive to dehydration stress) family protein mRNA	ERD (early-responsive to dehydration stress) family protein(AT4G15430)	coding protein	psRNATarget
AY064008.1	ncRNA:22   AAGGAAAAG-GAAUCGAAAACGA   1   ||*||||||-||||||||||||| targets:208   UUGCUUUUCUCUUAGCUUUUGCU   230 Target Full Sequence	3.0	Arabidopsis thaliana unknown protein (At4g15430) mRNA, complete cds	NA	coding protein	psRNATarget
KJ920361.1	ncRNA:22   AAGGAAAAG-GAAUCGAAAACGA   1   ||*||||||-||||||||||||| targets:56   UUGCUUUUCUCUUAGCUUUUGCU   78 Target Full Sequence	3.0	Arabidopsis thaliana hyperosmolality-gated Ca2+ permeable channel 1.6 (OSCA1.6) mRNA, complete cds	NA	coding protein	psRNATarget

Reference

1	PMID:17189346 "A family of microRNAs present in plants and animals"; Arteaga-Vazquez M, Caballero-Perez J, Vielle-Calzada JP; Plant Cell. 18:3355-3369(2006).