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BaseInfo

ncRNA ID novel_gar_miR2028
Species Gossypium arboreum
Class miRNA
Genome position Chr12:143916677-143916740 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 24
Mature sequence(if miRNA) 1 - AGACUGAAUUUGGAUCUCAGACGG - 24
Stem-loop(if miRNA) --  G  A          -   -  -UUUCUU G
  GU CU AGAUUCAGAU CAG CU       C U
  || || |||||||||| ||| ||       |
  CA GA UCUAGGUUUA GUC GA       G A
GG  -  C          A   A  CUAUAUU A
Stem-loop sequence GUGCUAAGAUUCAGAUCAGCUUUUCUUCGUAAGUUAUAUCAGACUGAAUUUGGAUCUCAGACGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017787079.1
ncRNA:24   GGCAGACUCUAGGUUUAAGUCAGA   1
  |=||-|||*=*|||||||||||||
targets:1323   CUGU-UGAAGCCCAAAUUCAGUCU   1345

3.0 PREDICTED: Gossypium arboreum uncharacterized LOC108483596 (LOC108483596), mRNA uncharacterized LOC108483596(LOC108483596) coding protein psRNATarget