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BaseInfo

ncRNA ID novel_gar_miR2027
Species Gossypium arboreum
Class miRNA
Genome position Chr12:138426687-138426763 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 24
Mature sequence(if miRNA) 1 - AUACUGUAUUCCUUUGAAACAAGC - 24
Stem-loop(if miRNA) --       A   C         AGC   UCU    GUUC
  AUACUGU UUC UUUGAAACA   GAA   UGAC    A
  ||||||| ||| |||||||||   |||   ||||    A
  UAUGAUA AAG AAAUUUUGU   CUU   ACUG    U
UU       -   A         GAA   ---    AGUU
Stem-loop sequence AUACUGUAUUCCUUUGAAACAAGCGAAUCUUGACGUUCAAUUUGAGUCAUUCAAGUGUUUUAAAAGAAAUAGUAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017767062.1
ncRNA:24   CGAACAAAGUUUCCUUAUGUCAUA   1
  ****||||||||||||||||*||*
targets:1608   UAAGGUUUCAAAGGAAUACAUUAA   1631

2.5 PREDICTED: Gossypium arboreum potassium transporter 5 (LOC108466688), mRNA potassium transporter 5(LOC108466688) coding protein psRNATarget