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BaseInfo

ncRNA ID	novel_gar_miR2025
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr12:116582429-116582581 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587
Length	24
Mature sequence(if miRNA)	130 - AGGGAGGUAACAGAGCUUAACGGU - 153
Stem-loop(if miRNA)	--      A   C             C  CA           C         AAAACUC   UAGGCUGCCACGUAAGA   CGUUAA CUC GUUACCUUCCUAA GA  GUCCUAUGUGG AGUCCAAAU       AUU                 C   |||||| ||| ||||||||||||| ||  ||||||||||| |||||||||       |||                 A   GCAAUU GAG CAAUGGAGGGAUU CU  CAGGAUGCACC UCAGGUUUA       CCA                 U UG      C   A             A  AC           A         ------C   AAAUUUAUGGUUGAAUC
Stem-loop sequence	CGUUAAACUCCGUUACCUUCCUAACGACAGUCCUAUGUGGCAGUCCAAAUAAAACUCAUUUAGGCUGCCACGUAAGACAUCUAAGUUGGUAUUUAAAACCCAUUUGGACUACCACGUAGGACCAUCAUUAGGGAGGUAACAGAGCUUAACGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017753110.1	ncRNA:24   UGGCAAUUCGAGACAAUGGAGGGA   1   ||=|||||*|||*||||||||||| targets:1597   ACUGUUAAACUCCGUUACCUCCCU   1620 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X7, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753109.1	ncRNA:24   UGGCAAUUCGAGACAAUGGAGGGA   1   ||=|||||*|||*||||||||||| targets:1600   ACUGUUAAACUCCGUUACCUCCCU   1623 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X6, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753105.1	ncRNA:24   UGGCAAUUCGAGACAAUGGAGGGA   1   ||=|||||*|||*||||||||||| targets:1630   ACUGUUAAACUCCGUUACCUCCCU   1653 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X3, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753107.1	ncRNA:24   UGGCAAUUCGAGACAAUGGAGGGA   1   ||=|||||*|||*||||||||||| targets:1687   ACUGUUAAACUCCGUUACCUCCCU   1710 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X4, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753108.1	ncRNA:24   UGGCAAUUCGAGACAAUGGAGGGA   1   ||=|||||*|||*||||||||||| targets:1705   ACUGUUAAACUCCGUUACCUCCCU   1728 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X5, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753103.1	ncRNA:24   UGGCAAUUCGAGACAAUGGAGGGA   1   ||=|||||*|||*||||||||||| targets:1735   ACUGUUAAACUCCGUUACCUCCCU   1758 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X1, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget
XM_017753104.1	ncRNA:24   UGGCAAUUCGAGACAAUGGAGGGA   1   ||=|||||*|||*||||||||||| targets:1790   ACUGUUAAACUCCGUUACCUCCCU   1813 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum A-kinase anchor protein 7-like (LOC108454597), transcript variant X2, mRNA	A-kinase anchor protein 7-like(LOC108454597)	coding protein	psRNATarget