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BaseInfo

ncRNA ID novel_gar_miR2024
Species Gossypium arboreum
Class miRNA
Genome position Chr12:114892510-114892583 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 24
Mature sequence(if miRNA) 51 - AGGAUAAAAUUACUGAUGCAGCAU - 74
Stem-loop(if miRNA) --  CA        U  A              AAAUU
  GU  UAUUAGUA UU UAUCUUGAAUUUUA     U
  ||  |||||||| || ||||||||||||||
  CG  GUAGUCAU AA AUAGGACUUAAAAU     U
UA  AC        U  A              ACUAC
Stem-loop sequence GUCAUAUUAGUAUUUAUAUCUUGAAUUUUAAAAUUUUCAUCAUAAAAUUCAGGAUAAAAUUACUGAUGCAGCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017748228.1
ncRNA:24   UACGACGUAGUCAUUAAAAUAGGA   1
  |||--||||*||||||||*|||||
targets:175   AUG--GCAUGAGUAAUUUCAUCCU   196

2.5 PREDICTED: Gossypium arboreum WAT1-related protein At4g08300 (LOC108450552), mRNA WAT1-related protein At4g08300(LOC108450552) coding protein psRNATarget
XM_017750017.1
ncRNA:24   UACGACGUAGUCAUUAAAAUAGGA   1
  |||--||||*||||||||*|||||
targets:141   AUG--GCAUGAGUAAUUUCAUCCU   162

2.5 PREDICTED: Gossypium arboreum WAT1-related protein At4g08300-like (LOC108452247), mRNA WAT1-related protein At4g08300-like(LOC108452247) coding protein psRNATarget