Search result

BaseInfo

ncRNA ID novel_gar_miR2016
Species Gossypium arboreum
Class miRNA
Genome position Chr1:74005350-74005426 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029586
Length 24
Mature sequence(if miRNA) 1 - AGUAGGACUCGAGGAGGAUGCUGC - 24
Stem-loop(if miRNA) --   -       GA       G   AAAAU     A   G
  AGU UCCUCCU  GGUUCUG UGG     UGAGG AUG U
  ||| |||||||  ||||||| |||     ||||| ||| U
  UCG AGGAGGA  UCAGGAU AUU     GCUCU UGC G
CG   U       GC       G   -----     A   U
Stem-loop sequence AGUUCCUCCUGAGGUUCUGGUGGAAAAUUGAGGAAUGGUUGUCGUAUCUCGUUAGUAGGACUCGAGGAGGAUGCUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017765933.1
ncRNA:24   CGUCGUAGGAGGAGCUCAGGAUGA   1
  |||||||||||||||=||||||||
targets:796   GCAGCAUCCUCCUCGGGUCCUACU   819

1.5 PREDICTED: Gossypium arboreum protein EXORDIUM-like 4 (LOC108465577), mRNA protein EXORDIUM-like 4(LOC108465577) coding protein psRNATarget