Search result

BaseInfo

ncRNA ID novel_gar_miR2014
Species Gossypium arboreum
Class miRNA
Genome position Chr1:127803990-127804075 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 24
Mature sequence(if miRNA) 1 - AGCAUGAUGGUAUAUUCUGAUGCG - 24
Stem-loop(if miRNA) --U    U U         G A   -----      UA     CU  C
   GUUA G AUGUAUUAU G UGC     AAAAUC  AUAUU  GC U
   |||| | ||||||||| | |||     ||||||  |||||  ||
   UAGU C UAUAUGGUA U ACG     UUUUAG  UGUAA  UG C
GCG    - U         G -   AAAGU      --     -U  U
Stem-loop sequence UGUUAUGUAUGUAUUAUGGAUGCAAAAUCUAAUAUUCUGCCUCUGUUAAUGUGAUUUUUGAAAGCAUGAUGGUAUAUUCUGAUGCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017754969.1
ncRNA:24   GCGUAGUCUUAUAUGGUAGUACGA   1
  =*=|||||*||||||||*||||||
targets:1133   UCUAUCAGUAUAUACCACCAUGCU   1156

2.5 PREDICTED: Gossypium arboreum LRR receptor-like serine/threonine-protein kinase RCH1 (LOC108456341), mRNA LRR receptor-like serine/threonine-protein kinase RCH1(LOC108456341) coding protein psRNATarget