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BaseInfo

ncRNA ID novel_gar_miR2013
Species Gossypium arboreum
Class miRNA
Genome position Chr11:78926230-78926312 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 21
Mature sequence(if miRNA) 1 - UUGGGGAAGCGUUUUUGCCAC - 21
Stem-loop(if miRNA) --       A       UG    A   A  -    -     AA
  UUGGGGA GCGUUUU  CCAC UCA CA AAGU GCGUC  C
  ||||||| |||||||  |||| ||| || |||| |||||
  GACCCCU CGUAAAA  GGUG AGU GU UUUA UGCGG  G
GG       -       UA    C   C  A    G     GA
Stem-loop sequence UUGGGGAAGCGUUUUUGCCACAUCAACAAAGUGCGUCAACGAGGGCGUGAUUUAUGCUGACGUGGAUAAAAUGCUCCCCAGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017762212.1
ncRNA:21   CACCGUUUUUGCGAAGGGGUU   1
  ***|||=*|||||||||||||
targets:308   AGAGCAGUAACGCUUCCCCAA   328

3.0 PREDICTED: Gossypium arboreum proline-rich receptor-like protein kinase PERK1 (LOC108462238), mRNA proline-rich receptor-like protein kinase PERK1(LOC108462238) coding protein psRNATarget