ncRNA ID | novel_gar_miR2013 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr11:78926230-78926312 [+] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR1029587 |
Length | 21 |
Mature sequence(if miRNA) | 1 - UUGGGGAAGCGUUUUUGCCAC - 21 |
Stem-loop(if miRNA) |
--       A       UG    A   A  -    -     AA   UUGGGGA GCGUUUU  CCAC UCA CA AAGU GCGUC  C   ||||||| |||||||  |||| ||| || |||| |||||   GACCCCU CGUAAAA  GGUG AGU GU UUUA UGCGG  G GG       -       UA    C   C  A    G     GA |
Stem-loop sequence | UUGGGGAAGCGUUUUUGCCACAUCAACAAAGUGCGUCAACGAGGGCGUGAUUUAUGCUGACGUGGAUAAAAUGCUCCCCAGGG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_017762212.1 |
|
3.0 | PREDICTED: Gossypium arboreum proline-rich receptor-like protein kinase PERK1 (LOC108462238), mRNA | proline-rich receptor-like protein kinase PERK1(LOC108462238) | coding protein | psRNATarget |