| ncRNA ID | novel_gar_miR2011 |
| Species | Gossypium arboreum |
| Class | miRNA |
| Genome position | Chr1:128570476-128570671 [-] |
| Reference genome | Gossypium_arboreum_v1.0 |
| Source | SRR1029587 |
| Length | 24 |
| Mature sequence(if miRNA) | 1 - ACUGCUGUUAGAGAGAUAACGGAG - 24 |
| Stem-loop(if miRNA) |
-- C - A CU GG U A ACA A CUAGUUGU -UGA A UAA UUGUUA CUCUCUAA AG UAGU UAUGU UA UCCAAAUA GUUUUAAAU AACUU AAUGU UGAGA AAAU AGAUUU U |||||| |||||||| || |||| ||||| || |||||||| ||||||||| ||||| ||||| ||||| |||| |||||| U GGCAAU GAGAGAUU UC GUCA AUGUA GU AGGUUUAU CAAAAUUUA UUGAA UUAUA ACUCU UUUA UUUAAA A GA A G - AG UU U C CAG C --AAAUGU CAGA A UAA |
| Stem-loop sequence | UUGUUACCUCUCUAAAGAUAGUCUUAUGUGGUAUUCCAAAUAAGUUUUAAAUACAAACUUAAAUGUCUAGUUGUUGAGAUGAAAAUAAGAUUUUAAUUAAAUAAAUUUAAUUUAGACUCUCAUGUAAAAUAUUCAAGUUGACAUUUAAAACCUAUUUGGAUUGUUAUGUAGAACUGCUGUUAGAGAGAUAACGGAG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_017782881.1 |
|
2.5 | PREDICTED: Gossypium arboreum putative pentatricopeptide repeat-containing protein At2g02150 (LOC108479994), transcript variant X2, mRNA | putative pentatricopeptide repeat-containing protein At2g02150(LOC108479994) | coding protein | psRNATarget | |||||||||
| XM_017782880.1 |
|
2.5 | PREDICTED: Gossypium arboreum putative pentatricopeptide repeat-containing protein At2g02150 (LOC108479994), transcript variant X1, mRNA | putative pentatricopeptide repeat-containing protein At2g02150(LOC108479994) | coding protein | psRNATarget |