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BaseInfo

ncRNA ID novel_gar_miR2006
Species Gossypium arboreum
Class miRNA
Genome position Chr1:136202876-136203088 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 24
Mature sequence(if miRNA) 190 - AUACAUGAAACUUUGAUUGUGGUU - 213
Stem-loop(if miRNA) --          C       G       AAUAUAUA     AACUUUAAUUUUGAUUCG     --     UUUAAA  A     UAU    --AUU             G   AA  UAA
  AUACAUGAAA UUUGAUU UGGUUUA        CAUGA                  AUCAU  ACACA      GA AUAAA   AUCA     UAUUUAUAUAUUG AUA  UA   U
  |||||||||| ||||||| |||||||        |||||                  |||||  |||||      || |||||   ||||     ||||||||||||| |||  ||
  UAUGUACUUU AAACUAA ACCAAAU        GUACU                  UAGUA  UGUGU      CU UAUUU   UAGU     AUAAAUAUAUAAC UAU  GU   U
AG          A       -       ---CAAGA     ------------------     AU     UAACAA  A     ---    AAAAU             G   GA  UUA
Stem-loop sequence AUACAUGAAACUUUGAUUGUGGUUUAAAUAUAUACAUGAAACUUUAAUUUUGAUUCGAUCAUACACAUUUAAAGAAAUAAAUAUAUCAAUUUAUUUAUAUAUUGGAUAAAUAUAAUUAUUUGAGUAUGCAAUAUAUAAAUAUAAAAUGAUUUUAUAUCAACAAUUGUGUUAAUGAUUCAUGAGAACUAAACCAAAUCAAAAUUUCAUGUAUGA