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BaseInfo

ncRNA ID novel_gar_miR2000
Species Gossypium arboreum
Class miRNA
Genome position Chr1:16242653-16242844 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 24
Mature sequence(if miRNA) 169 - AAAGGAAUAUAGAUGACGUGGCGU - 192
Stem-loop(if miRNA) --              U                    A                                       C    AAAAA    -   CAA
  GCCACGUCAUCUGU UUCCUUUCUAAUAGUUUUAU UCACAUCAGUAUUUUUAUCCUGAAUUUCAGGAUUUUAUC UGAA     UCAA AUU   A
  |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||     |||| |||
  CGGUGCAGUAGAUA AAGGAAAGAUUAUCAAAGUA AGUGUAGUCAUAAAAAUAGGACUUAAAGUUCUAAAAUAG ACUU     AGUU UAA   U
UG              U                    C                                       A    ---AA    C   AAU
Stem-loop sequence GCCACGUCAUCUGUUUUCCUUUCUAAUAGUUUUAUAUCACAUCAGUAUUUUUAUCCUGAAUUUCAGGAUUUUAUCCUGAAAAAAAUCAAAUUCAAAUUAAAAUCUUGAAAUUCAAGAUAAAAUCUUGAAAUUCAGGAUAAAAAUACUGAUGUGACAUGAAACUAUUAGAAAGGAAUAUAGAUGACGUGGCGU