ncRNA ID | novel_gar_miR2000 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr1:16242653-16242844 [+] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR1029587 |
Length | 24 |
Mature sequence(if miRNA) | 169 - AAAGGAAUAUAGAUGACGUGGCGU - 192 |
Stem-loop(if miRNA) |
--              U                    A                                       C    AAAAA    -   CAA   GCCACGUCAUCUGU UUCCUUUCUAAUAGUUUUAU UCACAUCAGUAUUUUUAUCCUGAAUUUCAGGAUUUUAUC UGAA     UCAA AUU   A   |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||     |||| |||   CGGUGCAGUAGAUA AAGGAAAGAUUAUCAAAGUA AGUGUAGUCAUAAAAAUAGGACUUAAAGUUCUAAAAUAG ACUU     AGUU UAA   U UG              U                    C                                       A    ---AA    C   AAU |
Stem-loop sequence | GCCACGUCAUCUGUUUUCCUUUCUAAUAGUUUUAUAUCACAUCAGUAUUUUUAUCCUGAAUUUCAGGAUUUUAUCCUGAAAAAAAUCAAAUUCAAAUUAAAAUCUUGAAAUUCAAGAUAAAAUCUUGAAAUUCAGGAUAAAAAUACUGAUGUGACAUGAAACUAUUAGAAAGGAAUAUAGAUGACGUGGCGU |