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BaseInfo

ncRNA ID novel_gar_miR1997
Species Gossypium arboreum
Class miRNA
Genome position Chr11:61764979-61765099 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 24
Mature sequence(if miRNA) 1 - CUGUUCAAUGUGGAAAUUGGGCCU - 24
Stem-loop(if miRNA) --   UU     U      -U      GCU   UU    -UUUCUUUUUUU  G     UG 
  CUG  CAAUG GGAAAU  GGGCCU   GUU  UUCU            UU UAAAA  GA
  |||  ||||| ||||||  ||||||   |||  ||||            || |||||  |A
  GAU  GUUGU UCUUUA  UUUGGG   UAA  AAGA            AG GUUUU  UU
CG   CG     -      UU      -UU   UU    UUUUAUAUUUUC  G     GU 
Stem-loop sequence CUGUUCAAUGUGGAAAUUGGGCCUGCUGUUUUUUCUUUUCUUUUUUUUUGUAAAAUGGAAUUUGUUUUGGGACUUUUAUAUUUUAGAAUUAAUUUGGGUUUUUAUUUCUUGUUGGCUAGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017789124.1
ncRNA:24   UCCGGGUUAAAGGUGUAACUUGUC   1
  ****|||*||||||||||||||||
targets:921   CCUGCCAUUUUCCACAUUGAACAG   944

1.0 PREDICTED: Gossypium arboreum uncharacterized LOC108485302 (LOC108485302), mRNA uncharacterized LOC108485302(LOC108485302) coding protein psRNATarget