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BaseInfo

ncRNA ID novel_gar_miR1992
Species Gossypium arboreum
Class miRNA
Genome position Chr1:142878223-142878285 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 24
Mature sequence(if miRNA) 1 - GCUCGACUCCGGCGACGGUCUCUG - 24
Stem-loop(if miRNA) -- CU    U              UGUAACA
  G  CGAC CCGGCGACGGUCUC       C
  |  |||| ||||||||||||||       C
  C  GCUG GGCCGUUGCCAGAG       C
CA AG    U              CCCAAGC
Stem-loop sequence GCUCGACUCCGGCGACGGUCUCUGUAACACCCCGAACCCGAGACCGUUGCCGGUGUCGGACAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017768416.1
ncRNA:24   GUCUCUGGCAGCGGCCUCAGCUCG   1
  =*||*||||||*||||||||||||
targets:2920   UCGAAACCGUCACCGGAGUCGAGC   2943

1.5 PREDICTED: Gossypium arboreum pentatricopeptide repeat-containing protein At3g22150, chloroplastic (LOC108467683), mRNA pentatricopeptide repeat-containing protein At3g22150, chloroplastic(LOC108467683) coding protein psRNATarget