ncRNA ID | novel_gar_miR1992 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr1:142878223-142878285 [+] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR1029587 |
Length | 24 |
Mature sequence(if miRNA) | 1 - GCUCGACUCCGGCGACGGUCUCUG - 24 |
Stem-loop(if miRNA) |
-- CU    U              UGUAACA   G  CGAC CCGGCGACGGUCUC       C   |  |||| ||||||||||||||       C   C  GCUG GGCCGUUGCCAGAG       C CA AG    U              CCCAAGC |
Stem-loop sequence | GCUCGACUCCGGCGACGGUCUCUGUAACACCCCGAACCCGAGACCGUUGCCGGUGUCGGACAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_017768416.1 |
|
1.5 | PREDICTED: Gossypium arboreum pentatricopeptide repeat-containing protein At3g22150, chloroplastic (LOC108467683), mRNA | pentatricopeptide repeat-containing protein At3g22150, chloroplastic(LOC108467683) | coding protein | psRNATarget |