Search result

BaseInfo

ncRNA ID novel_gar_miR1985
Species Gossypium arboreum
Class miRNA
Genome position Chr1:135223501-135223566 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 24
Mature sequence(if miRNA) 1 - AAUCGAAUUGAAUGGAUUGAUUAG - 24
Stem-loop(if miRNA) ---A    AAU   A                ACA
    AUCG   UGA UGGAUUGAUUAGACUG   A
    ||||   ||| ||||||||||||||||   A
    UAGC   ACU AUUUAAUUAGUCUGAU   C
AAUC    --C   A                AAU
Stem-loop sequence AAUCGAAUUGAAUGGAUUGAUUAGACUGACAAACUAAUAGUCUGAUUAAUUUAAUCACCGAUCUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017794088.1
ncRNA:24   GAUUAGUUAGGUAAGUUAAGCUAA   1
  **|=|||=|==|||||||||||||
targets:8   GCAGUCAGUUUAUUCAAUUCGAUU   31

3.0 PREDICTED: Gossypium arboreum uncharacterized LOC108489496 (LOC108489496), mRNA uncharacterized LOC108489496(LOC108489496) coding protein psRNATarget