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BaseInfo

ncRNA ID novel_gar_miR1971
Species Gossypium arboreum
Class miRNA
Genome position Chr12:39811928-39812124 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029586
Length 24
Mature sequence(if miRNA) 1 - CGGCGUUUGUAGGAAAAGUGCUGC - 24
Stem-loop(if miRNA) --C         A                        A               -   CCACAAA             C   A      A  UU  -   CC
   GGCGUUUGU GGAAAAGUGCUGCUAAAGGUUAUG CUUUUAGCGGCGUUU UUG       CGCCGCUAAAAGU AUG CUUUUA CG  GC UUU  C
   ||||||||| |||||||||||||||||||||||| ||||||||||||||| |||       ||||||||||||| ||| |||||| ||  || |||
   CCGCAAACA CCUUUUCGCGGCGAUUUUCAGUAC GAAAAUCGCCGCAAA AAC       GCGGCGAUUUUCA UAC GAAAAU GC  CG AAA  A
UCA         C                        C               C   -CCUUUC             C   C      C  --  C   CA
Stem-loop sequence CGGCGUUUGUAGGAAAAGUGCUGCUAAAGGUUAUGACUUUUAGCGGCGUUUUUGCCACAAACGCCGCUAAAAGUCAUGACUUUUAACGUUGCUUUCCCAACAAACGCCGCUAAAAGCCAUCACUUUUAGCGGCGCUUUCCCAACAAACGCCGCUAAAAGCCAUGACUUUUAGCGGCGCUUUUCCCACAAACGCCACU