Search result

BaseInfo

ncRNA ID	novel_gar_miR1970
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr1:135490597-135490688 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029586;SRR1029587
Length	24
Mature sequence(if miRNA)	1 - AGUUUUUAAUAGUAGAAAUGGAUG - 24
Stem-loop(if miRNA)	--       G               AUG C C     GAAUA  CA   UCUAUUU UACUGUUAAAAAUUG   C C UGACG     AC  G   ||||||| |||||||||||||||   | | |||||     ||  A   AGGUAAA AUGAUAAUUUUUGAC   G G AUUGC     UG  C GU       G               -CA A A     AGUCG  UU
Stem-loop sequence	UCUAUUUGUACUGUUAAAAAUUGAUGCCCCUGACGGAAUAACCAGACUUGUGCUGACGUUAAGAGACCAGUUUUUAAUAGUAGAAAUGGAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017760336.1	ncRNA:24   GUAGGUAAAGAUGAUAAUUUUUGA   1   ||||=|||||||||||||||||=| targets:2190   CAUCUAUUUCUACUAUUAAAAAUU   2213 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum protein NRT1/ PTR FAMILY 8.3-like (LOC108460726), transcript variant X1, mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC108460726)	coding protein	psRNATarget
XM_017760338.1	ncRNA:24   GUAGGUAAAGAUGAUAAUUUUUGA   1   ||||=|||||||||||||||||=| targets:2286   CAUCUAUUUCUACUAUUAAAAAUU   2309 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum protein NRT1/ PTR FAMILY 8.3-like (LOC108460726), transcript variant X2, mRNA	protein NRT1/ PTR FAMILY 8.3-like(LOC108460726)	coding protein	psRNATarget
XM_017757759.1	ncRNA:24   GUAGGUAAAGAUGAUAAUUUUUGA   1   =||=|||||||||||||||||=|| targets:1488   UAUUCAUUUCUACUAUUAAAAGCU   1511 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X2, mRNA	uncharacterized LOC108458388(LOC108458388)	coding protein	psRNATarget
XM_017757758.1	ncRNA:24   GUAGGUAAAGAUGAUAAUUUUUGA   1   =||=|||||||||||||||||=|| targets:1548   UAUUCAUUUCUACUAUUAAAAGCU   1571 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X1, mRNA	uncharacterized LOC108458388(LOC108458388)	coding protein	psRNATarget
XM_017759173.1	ncRNA:24   GUAGGUAAAGAUGAUAAUUUUUGA   1   ||||*|||||||||=||||||||| targets:2529   CAUCAAUUUCUACUGUUAAAAACU   2552 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized LOC108459768 (LOC108459768), mRNA	uncharacterized LOC108459768(LOC108459768)	coding protein	psRNATarget
XM_017787028.1	ncRNA:24   GUAGGUAAAGAUGAUAAUUUUUGA   1   =||==|||||||||||||||||=| targets:4362   UAUUUAUUUCUACUAUUAAAAAUU   4385 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum RNA polymerase II C-terminal domain phosphatase-like 1 (LOC108483565), transcript variant X1, mRNA	RNA polymerase II C-terminal domain phosphatase-like 1(LOC108483565)	coding protein	psRNATarget
XM_017786575.1	ncRNA:24   GUAGGUAAAGAUGAUAAUUUUUGA   1   =||==||||=||=||||||||||| targets:3327   UAUUUAUUUUUAUUAUUAAAAACU   3350 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum oxysterol-binding protein-related protein 2A (LOC108483282), transcript variant X2, mRNA	oxysterol-binding protein-related protein 2A(LOC108483282)	coding protein	psRNATarget