ncRNA ID | novel_gar_miR1958 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr11:43671480-43671537 [+] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR1029586 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AAUGUGACACGCUGAAUUCGGCCG - 24 |
Stem-loop(if miRNA) |
--AA   G    G            GUAA     UGU ACAC CUGAAUUCGGCC    C     ||| |||| ||||||||||||     ACA UGUG GAUUUGGGCUGG    G AAGG   G    G            GUCU |
Stem-loop sequence | AAUGUGACACGCUGAAUUCGGCCGUAACGUCUGGGUCGGGUUUAGGGUGUGACAGGAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_017762242.1 |
|
1.0 | PREDICTED: Gossypium arboreum metallophosphoesterase 1-like (LOC108462268), transcript variant X1, mRNA | metallophosphoesterase 1-like(LOC108462268) | coding protein | psRNATarget |