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BaseInfo

ncRNA ID novel_gar_miR1958
Species Gossypium arboreum
Class miRNA
Genome position Chr11:43671480-43671537 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029586
Length 24
Mature sequence(if miRNA) 1 - AAUGUGACACGCUGAAUUCGGCCG - 24
Stem-loop(if miRNA) --AA   G    G            GUAA
    UGU ACAC CUGAAUUCGGCC    C
    ||| |||| ||||||||||||
    ACA UGUG GAUUUGGGCUGG    G
AAGG   G    G            GUCU
Stem-loop sequence AAUGUGACACGCUGAAUUCGGCCGUAACGUCUGGGUCGGGUUUAGGGUGUGACAGGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017762242.1
ncRNA:24   GCCGGCUUAAGUCGCACAGUGUAA   1
  ***||||||*||||||||||||||
targets:1808   GACCCGAAUCCAGCGUGUCACAUU   1831

1.0 PREDICTED: Gossypium arboreum metallophosphoesterase 1-like (LOC108462268), transcript variant X1, mRNA metallophosphoesterase 1-like(LOC108462268) coding protein psRNATarget