Search result

BaseInfo

ncRNA ID novel_gar_miR1956
Species Gossypium arboreum
Class miRNA
Genome position Chr11:43666342-43666399 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029586
Length 24
Mature sequence(if miRNA) 1 - AAUGUGACACGCUGAAUUCGGCCG - 24
Stem-loop(if miRNA) --          G            GUAA
  AAUGUGACAC CUGAAUUCGGCC    C
  |||||||||| ||||||||||||
  UUACAUUGUG GAUUUGGGCUGG    G
AU          G            GUCU
Stem-loop sequence AAUGUGACACGCUGAAUUCGGCCGUAACGUCUGGGUCGGGUUUAGGGUGUUACAUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017762242.1
ncRNA:24   GCCGGCUUAAGUCGCACAGUGUAA   1
  ***||||||*||||||||||||||
targets:1808   GACCCGAAUCCAGCGUGUCACAUU   1831

1.0 PREDICTED: Gossypium arboreum metallophosphoesterase 1-like (LOC108462268), transcript variant X1, mRNA metallophosphoesterase 1-like(LOC108462268) coding protein psRNATarget