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BaseInfo

ncRNA ID novel_gar_miR1951
Species Gossypium arboreum
Class miRNA
Genome position Chr11:24889341-24889401 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029586
Length 21
Mature sequence(if miRNA) 1 - UUAUGUGAGAUUGAUCUGACA - 21
Stem-loop(if miRNA) --UUA   G    UG    G   A     U
     UGU AGAU  AUCU ACA AAAUA A
     ||| ||||  |||| ||| ||||| U
     GCA UCUA  UAGA UGU UUUAU A
UAAGA   G    GU    G   A     U
Stem-loop sequence UUAUGUGAGAUUGAUCUGACAAAAAUAUAUAUUAUUUAUGUGAGAUUGAUCUGACGAGAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017754454.1
ncRNA:21   ACAGUCUAGUUAGAGUGUAUU   1
  **|||*|||||*|||||||||
targets:513   CCUCACAUCAACCUCACAUAA   533

2.5 PREDICTED: Gossypium arboreum transcription factor WER-like (LOC108455883), transcript variant X1, mRNA transcription factor WER-like(LOC108455883) coding protein psRNATarget
XM_017754455.1
ncRNA:21   ACAGUCUAGUUAGAGUGUAUU   1
  **|||*|||||*|||||||||
targets:520   CCUCACAUCAACCUCACAUAA   540

2.5 PREDICTED: Gossypium arboreum transcription factor WER-like (LOC108455883), transcript variant X2, mRNA transcription factor WER-like(LOC108455883) coding protein psRNATarget