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BaseInfo

ncRNA ID novel_gar_miR1946
Species Gossypium arboreum
Class miRNA
Genome position Chr11:23014536-23014656 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029586
Length 24
Mature sequence(if miRNA) 1 - UCAGAAAGUCGAAUUGGCAAUGAA - 24
Stem-loop(if miRNA) --   GA              A   AU         U  UAUG    UAU     UUG   AU
  UCA  AAGUCGAAUUGGCA UGA  AAAGAAGCA GA    GGUU   GGGUU   AUU  A
  |||  |||||||||||||| |||  ||||||||| ||    ||||   |||||   |||
  AGU  UUCAGUUUAACUGU ACU  UUUCUUCGU CU    UCAG   UUCGG   UAA  G
AU   UC              C   AC         U  ----    -UC     UAA   CG
Stem-loop sequence UCAGAAAGUCGAAUUGGCAAUGAAUAAAGAAGCAUGAUAUGGGUUUAUGGGUUUUGAUUAUAGGCAAUAAUGGCUUCUGACUUCUUGCUUCUUUCAUCACUGUCAAUUUGACUUCUUGAUA