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BaseInfo

ncRNA ID novel_gar_miR1927
Species Gossypium arboreum
Class miRNA
Genome position Chr9:35805376-35805436 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029586
Length 24
Mature sequence(if miRNA) 38 - GGGAUUGUGGUUCCUCCGGCAGGG - 61
Stem-loop(if miRNA) GGGAUU    ---U      -     GGGAUU
      GUGG    UCCUCC GGCAG      U
      ||||    |||||| |||||      G
      CACC    AGGAGG UUGUC      G
--GUUC    CAGU      G     GGUGUU
Stem-loop sequence GGGAUUGUGGUUCCUCCGGCAGGGGAUUUGGUUGUGGCUGUUGGGAGGAUGACCCACCUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017784530.1
ncRNA:24   GGGACGGCCUCCUUGGUGUUAGGG   1
  ||=||||**|||||||||||||||
targets:2728   CCUUGCCAAAGGAACCACAAUCCC   2751

2.0 PREDICTED: Gossypium arboreum F-box protein At4g22280-like (LOC108481388), mRNA F-box protein At4g22280-like(LOC108481388) coding protein psRNATarget