| ncRNA ID | novel_gar_miR1916 |
| Species | Gossypium arboreum |
| Class | miRNA |
| Genome position | Chr9:91043333-91043531 [+] |
| Reference genome | Gossypium_arboreum_v1.0 |
| Source | SRR1029586 |
| Length | 24 |
| Mature sequence(if miRNA) | 176 - AUUGGUUGAAUUGAGAACUGGUGU - 199 |
| Stem-loop(if miRNA) |
-- A CAAUUCAAUC A C AAAUUAAUA UCCA AUUUGUU U ACCA UUCUCGAUUCAACUAGUUCGAU GUCG ACCAACA UAAUUAAAA AUUCAUAAAAAUCUAAAAA AGUAA UAUAUAUA A |||| |||||||||||||||||||||| |||| ||||||| ||||||||| ||||||||||||||||||| ||||| |||||||| UGGU AAGAGUUAAGUUGGUUAAGCUG UAGC UGGUUGU AUUAAUUUU UAAGUAUUUUUAGAUUUUU UCAUU AUAUAUAU U UG C ---------A C U --------- ---- ------- A |
| Stem-loop sequence | ACCAAUUCUCGAUUCAACUAGUUCGAUCAAUUCAAUCGUCGAACCAACACUAAUUAAAAAAAUUAAUAAUUCAUAAAAAUCUAAAAAUCCAAGUAAAUUUGUUUAUAUAUAUAUAUAUAUAUAUUACUUUUUUAGAUUUUUAUGAAUUUUUAAUUAUUGUUGGUCCGAUAGUCGAAUUGGUUGAAUUGAGAACUGGUGU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_017764766.1 |
|
2.5 | PREDICTED: Gossypium arboreum transcription factor TCP4-like (LOC108464456), transcript variant X2, mRNA | transcription factor TCP4-like(LOC108464456) | coding protein | psRNATarget | |||||||||
| XM_017764765.1 |
|
2.5 | PREDICTED: Gossypium arboreum transcription factor TCP4-like (LOC108464456), transcript variant X1, mRNA | transcription factor TCP4-like(LOC108464456) | coding protein | psRNATarget |