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BaseInfo

ncRNA ID	novel_gar_miR1912
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr11:101980520-101980686 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029586
Length	24
Mature sequence(if miRNA)	1 - GAAGGACCAAUUUGCUCUUUGAUC - 24
Stem-loop(if miRNA)	--                  G      G     GU        U  C   -AG      U   U   CAUAC    U        GCA   UUAAAGAGCAAAUUGGUC UUUCUA UAAAA  UUCAUCCA UU UAU   UUAAAA UGG CCG     GAUA GUUACAUG   C   |||||||||||||||||| |||||| |||||  |||||||| || |||   |||||| ||| |||     |||| ||||||||   AGUUUCUCGUUUAACCAG GAAGAU AUUUU  AAGUAGGU GA AUG   AGUUUU AUU GGU     CUGU UAAUGUAC   A CU                  -      A     UG        C  A   AGA      U   -   -----    -        ACU
Stem-loop sequence	UUAAAGAGCAAAUUGGUCGUUUCUAGUAAAAGUUUCAUCCAUUUCUAUAGUUAAAAUUGGUCCGCAUACGAUAUGUUACAUGGCACAUCACAUGUAAUUGUCUGGUUAUUUUUGAAGAGUAAAGCUGGAUGAAGUUUUUAAUAGAAGGACCAAUUUGCUCUUUGAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017777449.1	ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAG   1   *|||||||||||||||||||=||| targets:1634   AAUCAAAGAGCAAAUUGGUCUUUC   1657 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum cytochrome P450 71D10-like (LOC108475481), mRNA	cytochrome P450 71D10-like(LOC108475481)	coding protein	psRNATarget
XM_017752799.1	ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAG   1   *||=||||||||||||||||*||| targets:2003   UAUUAAAGAGCAAAUUGGUCAUUC   2026 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized LOC108454360 (LOC108454360), transcript variant X2, mRNA	uncharacterized LOC108454360(LOC108454360)	coding protein	psRNATarget
XM_017752798.1	ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAG   1   *||=||||||||||||||||*||| targets:2012   UAUUAAAGAGCAAAUUGGUCAUUC   2035 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized LOC108454360 (LOC108454360), transcript variant X1, mRNA	uncharacterized LOC108454360(LOC108454360)	coding protein	psRNATarget
XM_017754642.1	ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAG   1   *||=||||||=||||||||||||* targets:796   AAUUAAAGAGUAAAUUGGUCCUUA   819 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum uncharacterized LOC108456052 (LOC108456052), transcript variant X1, mRNA	uncharacterized LOC108456052(LOC108456052)	coding protein	psRNATarget
XM_017757759.1	ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAG   1   *|||||||||||||||||||*||= targets:1451   UAUCAAAGAGCAAAUUGGUCAUUU   1474 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X2, mRNA	uncharacterized LOC108458388(LOC108458388)	coding protein	psRNATarget
XM_017757758.1	ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAG   1   *|||||||||||||||||||*||= targets:1511   UAUCAAAGAGCAAAUUGGUCAUUU   1534 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X1, mRNA	uncharacterized LOC108458388(LOC108458388)	coding protein	psRNATarget